BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZB01FM1.SCF screened BAC_end
(990 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig362 315 9e-86
3x_Contig258 212 1e-54
>3x_Contig362
Length = 1532
Score = 315 bits (159), Expect = 9e-86
Identities = 177/183 (96%)
Strand = Plus / Plus
Query: 87 ttgaacaatgtcattagaatcaagagaatgtgacgaaaagggctgagtggaagactgtac 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 ttgaacaatgtcattagaatcaagagaatgtgacgaaaagggctgagtggaagactgtac 1260
Query: 147 attttcttattctgcaggcactgtggggattacactttgtaagatagtatagcacgaaaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 attttcttattctgcaggcactgtggggattacactttgtaagatagtatagcacgaaaa 1320
Query: 207 tttacttgctgcctttataagtctcaacggtatgctgttcgtttggtttctcttacaatt 266
|||||||||||| |||||||||||||| ||||||||||| ||||||||| | ||| ||||
Sbjct: 1321 tttacttgctgcatttataagtctcaaaggtatgctgttagtttggtttatattaaaatt 1380
Query: 267 atg 269
|||
Sbjct: 1381 atg 1383
>3x_Contig258
Length = 899
Score = 212 bits (107), Expect = 1e-54
Identities = 263/294 (89%), Gaps = 16/294 (5%)
Strand = Plus / Minus
Query: 220 tttataagtctcaacggtatgctgttcgtttggtttctcttacaattatggtttctttca 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 897 tttataagtctcaacggtatgctgttcgtttggtttctcttacaattatggtttc-ttca 839
Query: 280 aggctgtgtttgtggaatttccattccaaaagctactatgattcaacattgggcagaact 339
||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||| ||
Sbjct: 838 aggctgtgtttgt-gaatttccatt-caaaagctactatgattcaacatt-ggcagacct 782
Query: 340 aatgagtattaaacgaaacttaattccggttcggttattgancccttttcaacaagaacc 399
|||||||||| |||||||||| ||||||| || | |||||| ||| |||||||||| ||
Sbjct: 781 aatgagtatt-aacgaaactt-attccgg-tccgctattgagccc-tttcaacaag-acg 727
Query: 400 agagtgccaggtttcaaagggtttcgaaaagaggtacaaaaatttggcttaaaatgattt 459
||||||||||| ||||||||| |||| |||||||||||| | |||| ||| | |||| ||
Sbjct: 726 agagtgccagg-ttcaaaggg-ttcg-aaagaggtacaagagtttgtctt-agatgagtt 671
Query: 460 taaaatttattaattagaacttgggccatcgaattacaaaatttttgaagaaaa 513
| |||| ||| ||| ||||| ||||| ||||||||||||| ||||||||||||
Sbjct: 670 t-aaatctatgaatcagaac-tgggcagtcgaattacaaaa-ttttgaagaaaa 620
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,993
Number of Sequences: 1807
Number of extensions: 14993
Number of successful extensions: 188
Number of sequences better than 1.0e-20: 2
length of query: 990
length of database: 10,358,551
effective HSP length: 16
effective length of query: 974
effective length of database: 10,329,639
effective search space: 10061068386
effective search space used: 10061068386
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)