BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZB01RM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1245 1386 0.0
>3x_Contig1245
Length = 6017
Score = 1386 bits (699), Expect = 0.0
Identities = 736/745 (98%), Gaps = 4/745 (0%)
Strand = Plus / Minus
Query: 48 ttaaagttttttttggggcaaagcaccgcttttgggggcaatccgtttgagttaatgtcc 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4455 ttaaagttttttttggggcaaagcaccgcttttgggggcaatccgtttgagttaatgtcc 4396
Query: 108 gggtaagatatttgaaaaatataggatttcattcaggtgagtaaaaccacacacatgcat 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4395 gggtaagatatttgaaaaatataggatttcattcaggtgagtaaaaccacacacatgcat 4336
Query: 168 attgattcattcagccataaaagctctgttccacagtttgagcaacactttggtgtgaaa 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4335 attgattcattcagccataaaagctctgttccacagtttgagcaacactttggtgtgaaa 4276
Query: 228 tacggaacgaaggaggcagtgagcatttctcgtaacaaaccatggttaaaagggcgatct 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4275 tacggaacgaaggaggcagtgagcatttctcgtaacaaaccatggttaaaagggcgatct 4216
Query: 288 ccaaaaccgtgttcattgaaattgaagtcgggcatggaatttctaacagttaatacatca 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4215 ccaaaaccgtgttcattgaaattgaagtcgggcatggaatttctaacagttaatacatca 4156
Query: 348 catcctctgaatgatgaagatgtcaaaaagtttgagaaatttgttggaacggtactgtcg 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4155 catcctctgaatgatgaagatgtcaaaaagtttgagaaatttgttggaacggtactgtcg 4096
Query: 408 agcggggtcagggcgttttatatgaaagggaatggtgggaaactaccggatgaacgctgt 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4095 agcggggtcagggcgttttatatgaaagggaatggtgggaaactaccggatgaacgctgt 4036
Query: 468 atgtatgtatcgagtgatggtcgtgagttcgatataaagaatttccttccaatctcatat 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4035 atgtatgtatcgagtgatggtcgtgagttcgatataaagaatttccttccaatctcatat 3976
Query: 528 ccacgatttgatggggatatgacagtagagcaagcgtatgaaatcttggtagaaaataag 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3975 ccacgatttgatggggatatgacagtagagcaagcgtatgaaatcttggtagaaaataag 3916
Query: 588 tatttggttcctagagactatatccccatcgtaattgatggaggggggtttcctttctgt 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3915 tatttggttcctagagactatatccccatcgtaattgatggaggggggtttcctttctgt 3856
Query: 648 ttgagaaaaagcagtgaagacgttttctttgctaatatagaatccggtgagttgatcttc 707
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3855 ttgagaaaaggcagtgaagacgttttctttgctaatatagaatccggtgagttgatcttc 3796
Query: 708 attganaaggatcttggaacatttgttactggaagtaatcacagaagatgaggcccgggc 767
||||| |||||||| | ||||||||||||||| |||||||||||||||||||||| ||||
Sbjct: 3795 attgagaaggatctggaaacatttgttactgg-agtaatcacagaagatgaggcctgggc 3737
Query: 768 tttaaattcaataacctgaaattat 792
|||||||||||| ||||||||||
Sbjct: 3736 -ttaaattcaata--ctgaaattat 3715
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6603
Number of Sequences: 1807
Number of extensions: 6603
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)