BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZB02FM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1575 1219 0.0
>3x_Contig1575
Length = 11952
Score = 1219 bits (615), Expect = 0.0
Identities = 650/659 (98%), Gaps = 2/659 (0%)
Strand = Plus / Minus
Query: 87 gaattcaacaccagcagcagccaaatcatgttcaatcaaagcattagctggttccaaaag 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8063 gaattcaacaccagcagcagccaaatcatgttcaatcaaagcattagctggttccaaaag 8004
Query: 147 atgagaatggaaaggagaaacgattggcaaaaacctgttaaaaaatttcaactttctttc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8003 atgagaatggaaaggagaaacgattggcaaaaacctgttaaaaaatttcaactttctttc 7944
Query: 207 gctgaatgggattcttgcttgatccaaaccagcaggggccttagcctttctcaaggtcaa 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7943 gctgaatgggattcttgcttgatccaaaccagcaggggccttagcctttctcaaggtcaa 7884
Query: 267 gttcaaaccatatagagattgtggtggacctgatacgaccaagtttctggcaccattgac 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7883 gttcaaaccatatagagattgtggtggacctgatacgaccaagtttctggcaccattgac 7824
Query: 327 caaagaaacaacgatatgcttggactctggtaagtgagcgttagtttgatcgatataagt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7823 caaagaaacaacgatatgcttggactctggtaagtgagcgttagtttgatcgatataagt 7764
Query: 387 ttgaacttgatcctgagtcaagttagagatggacaacataggagttggtacaccttcacc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7763 ttgaacttgatcctgagtcaagttagagatggacaacataggagttggtacaccttcacc 7704
Query: 447 gttttcgacagaatcttccaacatagatggtggtaaagaggtttttgggtaaacttggta 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7703 gttttcgacagaatcttccaacatagatggtggtaaagaggtttttgggtaaacttggta 7644
Query: 507 acatctgacaccgatgaagaatagtaacttgatagtcttagtcatagccttgaaataaga 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7643 acatctgacaccgatgaagaatagtaacttgatagtcttagtcatagccttgaaataaga 7584
Query: 567 ttcccaagaatcagcttcagcgattgcaacggcagtggccaaaccttggg-atgaccagt 625
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 7583 ttcccaagaatcagcttcagcgattgcaacggcagtggccaaaccttgggaatgaccagt 7524
Query: 626 ggcgccgactaggctatctcttagttgacggggggtgaagtttaagattctagcagttaa 685
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 7523 ggcgccgactaggctatctcttagttgaccgggggtgaagtttaagattctagcagttaa 7464
Query: 686 agtgttatgcacgaatttgattacaccga-taaaggacaagaatttggatttgacaaca 743
||||| ||||||||||| || ||||||| ||||||||||||| ||||| |||||||||
Sbjct: 7463 agtgtaatgcacgaattgaataacaccgattaaaggacaagaaattggaattgacaaca 7405
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6712
Number of Sequences: 1807
Number of extensions: 6712
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)