BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZB02RM1.SCF screened BAC_end
(954 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1652 1649 0.0
>3x_Contig1652
Length = 14842
Score = 1649 bits (832), Expect = 0.0
Identities = 890/905 (98%), Gaps = 4/905 (0%)
Strand = Plus / Minus
Query: 44 gcttcttgagtctttccttcctttcttcagctttcttggatctcttcttttcatccttcg 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12563 gcttcttgagtctttccttcctttcttcagctttcttggatctcttcttttcatccttcg 12504
Query: 104 cattcgaaatggtgagaaccttttgcatgaaggaacgtgcctttttctcttcgccgccta 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12503 cattcgaaatggtgagaaccttttgcatgaaggaacgtgcctttttctcttcgccgccta 12444
Query: 164 gaacgacagctctcttagccatgtatgttttcttcttttgcggtttcatttgatagatct 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12443 gaacgacagctctcttagccatgtatgttttcttcttttgcggtttcatttgatagatct 12384
Query: 224 gggatttgaaaggtaagtctttggcaacagattttggtacctttaaaccgttgaagttcc 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12383 gggatttgaaaggtaagtctttggcaacagattttggtacctttaaaccgttgaagttcc 12324
Query: 284 tttcaactctttcaaccttcttatatgtactgtcattgttggtcggtaaatcgattccaa 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12323 tttcaactctttcaaccttcttatatgtactgtcattgttggtcggtaaatcgattccaa 12264
Query: 344 gagatgctctaatttgaccagttagtctcaaacccttccattcagttttatcttttagca 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12263 gagatgctctaatttgaccagttagtctcaaacccttccattcagttttatcttttagca 12204
Query: 404 acaatgaagtaactgggttgtagaatttcttaacttggattggataccatgacctaagaa 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12203 acaatgaagtaactgggttgtagaatttcttaacttggattggataccatgacctaagaa 12144
Query: 464 ttataatgtcactcaatagtatcttatcctcaaaagttgccctgaaatggccttctggtt 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12143 ttataatgtcactcaatagtatcttatcctcaaaagttgccctgaaatggccttctggtt 12084
Query: 524 ttgatagagcacgcttgatttcaccacgaataccggaaacagtcttgatttgggcacctt 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12083 ttgatagagcacgcttgatttcaccacgaataccggaaacagtcttgatttgggcacctt 12024
Query: 584 cgaaccgtgcaacttccatagcgctagagaacatatcctttatgaaggcagtgttcttga 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12023 cgaaccgtgcaacttccatagcgctagagaacatatcctttatgaaggcagtgttcttga 11964
Query: 644 agattnttgtaggataaccaacaagctntaatttcttcacaatttctacgcttgcatcga 703
||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 11963 agattttgtaaggataaccaacaagctttaatttcttcacaatttctacgcttgcatcga 11904
Query: 704 tctcctcttacataccagtcgcagctattctgaaacttccagttgtatcactgttagcaa 763
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11903 tctcctctacaataccagtcgcagctattctgaaacttccagttgtatcactgttagcaa 11844
Query: 764 ctatttgaacaccacagaaagtggtatttggcgagcacaagggaccatagaaagaagctg 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11843 ctatttgaacaccacagaaagtggtatttggcgagcacaagggaccatagaaagaagctg 11784
Query: 824 taccaataagcatgttctggagtatacttcaacattctagtcctggttnctagagtcact 883
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 11783 ta-caataagcatgttctggagtatacttcaacattctagtcctggtt-ctagagtcact 11726
Query: 884 antggtgtatattgggtagagtttgggaacgtctcccacc-agagataaaactaaaggat 942
| ||||||||||| |||||||||||| ||||||||| ||| |||||||||||||||||||
Sbjct: 11725 agtggtgtatatt-ggtagagtttggaaacgtctccaaccaagagataaaactaaaggat 11667
Query: 943 cattt 947
|||||
Sbjct: 11666 cattt 11662
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6940
Number of Sequences: 1807
Number of extensions: 6940
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 954
length of database: 10,358,551
effective HSP length: 16
effective length of query: 938
effective length of database: 10,329,639
effective search space: 9689201382
effective search space used: 9689201382
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)