BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZB03FM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1766 1033 0.0
>3x_Contig1766
Length = 23951
Score = 1033 bits (521), Expect = 0.0
Identities = 555/564 (98%), Gaps = 2/564 (0%)
Strand = Plus / Plus
Query: 87 ttcagtctacccaatctttcggatgatatgatttgcgaatcgccttcaggcaccaataaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19854 ttcagtctacccaatctttcggatgatatgatttgcgaatcgccttcaggcaccaataaa 19913
Query: 147 ataaccttagccttaggggaataatgtctatatttcatacctggagttttgactttttca 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19914 ataaccttagccttaggggaataatgtctatatttcatacctggagttttgactttttca 19973
Query: 207 tcgtccttgatgtttactttagtctctaccagacactctttccatagaggtccgccaatg 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19974 tcgtccttgatgtttactttagtctctaccagacactctttccatagaggtccgccaatg 20033
Query: 267 tttagaatattctcataggtaaaaccacctggccttaataacattgncggagttacaagc 326
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 20034 tttagaatattctcataggtaaaaccacctggccttaataacattggcggagttacaagc 20093
Query: 327 ccatcgactacagtagattcgacaccaacagaacatttaccaccatctaaaataagtggt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20094 ccatcgactacagtagattcgacaccaacagaacatttaccaccatctaaaataagtggt 20153
Query: 387 attctaccattcaagtcatggaatacgtgttcagcggtcgttggtgatggtcttgtagat 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20154 attctaccattcaagtcatggaatacgtgttcagcggtcgttggtgatggtcttgtagat 20213
Query: 447 gcgttggctgaaggtgctgcgattggggtatcactcaatgctatttaatgctcttgc-at 505
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 20214 gcgttggctgaaggtgctgcgattggggtatcactcaatgcta-ttaatgctcttgcaat 20272
Query: 506 cggattagcagggattcgacacgcaaatgtttgttgatttgcagtattcaatttggataa 565
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 20273 cggattagcagggattcgacacgcaaatgttggttgatttgcagtagtcaatttggataa 20332
Query: 566 tgtgtttctgtttgaaccgtcgggaattgataagagtatgttaagtggcccagcccacaa 625
|||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 20333 tgtgtttctgtttgaaccgtcgggaattgataagagtatggtaagtggcccaggccacag 20392
Query: 626 gttttccactaatggatgataaat 649
|||||||||||||||||||||||
Sbjct: 20393 tttttccactaatggatgataaat 20416
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8859
Number of Sequences: 1807
Number of extensions: 8859
Number of successful extensions: 120
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)