BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZB03RM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1486 1635 0.0
>3x_Contig1486
Length = 12131
Score = 1635 bits (825), Expect = 0.0
Identities = 840/844 (99%), Gaps = 1/844 (0%)
Strand = Plus / Plus
Query: 44 gctttacaatttttggagcaatttcaaaagagcatagaagcatggcaaatctgcttcgaa 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2963 gctttacaatttttggagcaatttcaaaagagcatagaagcatggcaaatctgcttcgaa 3022
Query: 104 gtattaagcaagcatgaagcagacaacttacagttgcaaatgtttgcttgtcaaactcta 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3023 gtattaagcaagcatgaagcagacaacttacagttgcaaatgtttgcttgtcaaactcta 3082
Query: 164 gtgaacaaagtcacctatgatctaaaccaggtcaataccgaattagagagtttcatggga 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 3083 gtgaacaaagtcacctatgatctaaaccaggtcaataccgaattagagagtttcaaggga 3142
Query: 224 aagctctttgagttcatcgctatgtatgaagagaagatcatagtaacacagttgaacgtg 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3143 aagctctttgagttcatcgctatgtatgaagagaagatcatagtaacacagttgaacgtg 3202
Query: 284 gcactagcccgatttaccattcagtatcttgattggaggaatccgctagttgaaattatt 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3203 gcactagcccgatttaccattcagtatcttgattggaggaatccgctagttgaaattatt 3262
Query: 344 aatactctaaatggtcttccgggaaagttactactgtttttgaagattctcccagaggaa 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3263 aatactctaaatggtcttccgggaaagttactactgtttttgaagattctcccagaggaa 3322
Query: 404 acattggatatcaaatccactcctctatcccaagatgaatttgagtgtagaacacacgaa 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3323 acattggatatcaaatccactcctctatcccaagatgaatttgagtgtagaacacacgaa 3382
Query: 464 cttatagataacattggagaagacgtattgaaatttttgatttcatgtttggatagagtc 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3383 cttatagataacattggagaagacgtattgaaatttttgatttcatgtttggatagagtc 3442
Query: 524 ggaactgaaggcatatctgcttctaaaatcatttcgtgctttggatcgtggtgttatgaa 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3443 ggaactgaaggcatatctgcttctaaaatcatttcgtgctttggatcgtggtgttatgaa 3502
Query: 584 tttccaatagaacaggtattacaagtgactccattgataaacaccgtgttccaagtcttg 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3503 tttccaatagaacaggtattacaagtgactccattgataaacaccgtgttccaagtcttg 3562
Query: 644 catacttcatatgatactgattctgattcttttgaagctgcagtagaatgcttatgtgtg 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3563 catacttcatatgatactgattctgattcttttgaagctgcagtagaatgcttatgtgtg 3622
Query: 704 ttattaagagaaacgagagacgcagccaacgatacaatcatacatgcgctttacgagcaa 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3623 ttattaagagaaacgagagacgcagccaacgatacaatcatacatgcgctttacgagcaa 3682
Query: 764 cttttagctttgcaacaaaagctattgccaatcacaaccatttctgactgggaagattac 823
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 3683 cttttagctttgcaacaaaagctattgccaatcacaaccatttctgactgggaagaatac 3742
Query: 824 gaagagattatggatccactcacacgtntnattcgttgaagctggcgaagcgtggtgtgt 883
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 3743 gaagagattatggatccactcacacgt-ttattcgttgaagctggcgaagcgtggtgtgt 3801
Query: 884 tttt 887
||||
Sbjct: 3802 tttt 3805
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7073
Number of Sequences: 1807
Number of extensions: 7073
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)