BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC44ZB04FM1.SCF screened BAC_end
         (981 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1150                                                         442   e-124

>3x_Contig1150 
          Length = 4046

 Score =  442 bits (223), Expect = e-124
 Identities = 371/410 (90%), Gaps = 9/410 (2%)
 Strand = Plus / Minus

                                                                        
Query: 89   tttcttgaaatcgaaactgaaagaggccttgatggatcaacatcatattcaggaatatca 148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2885 tttcttgaaatcgaaactgaaagaggccttgatggatcaacatcatattcaggaatatca 2826

                                                                        
Query: 149  aagttaaatttgtcttcttcagtattatcagcagattccgaacgactcttccttttcata 208
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2825 aagttaaatttgtcttcttcagtattatcagcagattccgaacgactcttccttttcata 2766

                                                                        
Query: 209  gtagctacaccttatatcaggaattaatgggattgagccaaaatcactgtataaccaagt 268
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2765 gtagctacaccatatatcaggaattaatgggattgagccaaaatcactgtataaccaagt 2706

                                                                        
Query: 269  ataactggtaacaactatcatcctctttttcttgaaatactggtttaattttcctgggaa 328
            |||||||||||||||||||||||||||||  | ||||||||||||||  ||| || | | 
Sbjct: 2705 ataactggtaacaactatcatcctcttttcttggaaatactggttta--ttttcttgtat 2648

                                                                        
Query: 329  atggtttaaaagccttaaaatgaaatggcaagttcgacttaggtttttccccgaaagaac 388
            || ||||||||||||||| ||| ||  ||||  ||||| || ||| | | | ||||||||
Sbjct: 2647 attgtttaaaagccttaagatggaagtgcaaagtcgacataagttatacacagaaagaac 2588

                                                                        
Query: 389  caccgatgggaactttttgaactgaaaacagcaaaaacacttgcaattttgaagattaca 448
             || || | |||  ||| |||||| ||||||||||||||| ||||||||||| |||||| 
Sbjct: 2587 aacaga-gtgaaactttcgaactg-aaacagcaaaaacac-tgcaattttgaggattac- 2532

                                                              
Query: 449  aggtgaggacaaaacggctgcaaactattgagaccaccaaatttgacttt 498
            |||||| ||| |||||||||||||||| ||||| |||||||| |||||||
Sbjct: 2531 aggtga-gac-aaacggctgcaaacta-tgagaacaccaaatatgacttt 2485


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8260
Number of Sequences: 1807
Number of extensions: 8260
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 981
length of database: 10,358,551
effective HSP length: 16
effective length of query: 965
effective length of database: 10,329,639
effective search space: 9968101635
effective search space used: 9968101635
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)