BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC44ZB04FM1.SCF screened BAC_end (981 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1150 442 e-124 >3x_Contig1150 Length = 4046 Score = 442 bits (223), Expect = e-124 Identities = 371/410 (90%), Gaps = 9/410 (2%) Strand = Plus / Minus Query: 89 tttcttgaaatcgaaactgaaagaggccttgatggatcaacatcatattcaggaatatca 148 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2885 tttcttgaaatcgaaactgaaagaggccttgatggatcaacatcatattcaggaatatca 2826 Query: 149 aagttaaatttgtcttcttcagtattatcagcagattccgaacgactcttccttttcata 208 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2825 aagttaaatttgtcttcttcagtattatcagcagattccgaacgactcttccttttcata 2766 Query: 209 gtagctacaccttatatcaggaattaatgggattgagccaaaatcactgtataaccaagt 268 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2765 gtagctacaccatatatcaggaattaatgggattgagccaaaatcactgtataaccaagt 2706 Query: 269 ataactggtaacaactatcatcctctttttcttgaaatactggtttaattttcctgggaa 328 ||||||||||||||||||||||||||||| | |||||||||||||| ||| || | | Sbjct: 2705 ataactggtaacaactatcatcctcttttcttggaaatactggttta--ttttcttgtat 2648 Query: 329 atggtttaaaagccttaaaatgaaatggcaagttcgacttaggtttttccccgaaagaac 388 || ||||||||||||||| ||| || |||| ||||| || ||| | | | |||||||| Sbjct: 2647 attgtttaaaagccttaagatggaagtgcaaagtcgacataagttatacacagaaagaac 2588 Query: 389 caccgatgggaactttttgaactgaaaacagcaaaaacacttgcaattttgaagattaca 448 || || | ||| ||| |||||| ||||||||||||||| ||||||||||| |||||| Sbjct: 2587 aacaga-gtgaaactttcgaactg-aaacagcaaaaacac-tgcaattttgaggattac- 2532 Query: 449 aggtgaggacaaaacggctgcaaactattgagaccaccaaatttgacttt 498 |||||| ||| |||||||||||||||| ||||| |||||||| ||||||| Sbjct: 2531 aggtga-gac-aaacggctgcaaacta-tgagaacaccaaatatgacttt 2485 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8260 Number of Sequences: 1807 Number of extensions: 8260 Number of successful extensions: 61 Number of sequences better than 1.0e-20: 1 length of query: 981 length of database: 10,358,551 effective HSP length: 16 effective length of query: 965 effective length of database: 10,329,639 effective search space: 9968101635 effective search space used: 9968101635 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)