BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZB04RM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1755 1043 0.0
>3x_Contig1755
Length = 22936
Score = 1043 bits (526), Expect = 0.0
Identities = 658/694 (94%), Gaps = 6/694 (0%)
Strand = Plus / Minus
Query: 49 ggttgtgttctgtgtggtttttgggtgttatgaaaaagaaacactttgaggactctgttc 108
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17368 ggttgtgttctgtgtgggttttgggtgttatgaaaaagaaacactttgaggactctgttc 17309
Query: 109 ttttttttaatacaaaactaaaaaaaaacctagttcctggtgatgagcgatgagcccgat 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17308 ttttttttaatacaaaactaaaaaaaaacctagttcctggtgatgagcgatgagcccgat 17249
Query: 169 gagtttgtgcgtgtattttcgtatttcgatactaaagttgtgatgaggtatagcacatcg 228
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 17248 gagtttgtgcgtgtattttcgtatttcgatactaaagttgtgatgagggaaagcacatcg 17189
Query: 229 ttgaaagtgaaaaatttttcattttatatatgaatgttgaataaaaagtgaactttagtt 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17188 ttgaaagtgaaaaatttttcattttatatatgaatgttgaataaaaagtgaactttagtt 17129
Query: 289 tcttggattaaagaagttacagttaacattttcatagcggttttgatctgtaatattgta 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17128 tcttggattaaagaagttacagttaacattttcatagcggttttgatctgtaatattgta 17069
Query: 349 taaacccctccaaatcgtcaagctacattcatacttctaacaatggctgaaggtgttttc 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17068 taaacccctccaaatcgtcaagctacattcatacttctaacaatggctgaaggtgttttc 17009
Query: 409 ccaggtgctatcggtatcgatttaggtacaacttactcttgtgttgctacttacgagaat 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17008 ccaggtgctatcggtatcgatttaggtacaacttactcttgtgttgctacttacgagaat 16949
Query: 469 tccgttgaaattattgccaacgaacaa-gtaacagagtta-cccatcctttgttggcttc 526
||||||||||||||||||||||||||| |||||||||||| ||||||||| |||| ||||
Sbjct: 16948 tccgttgaaattattgccaacgaacaaggtaacagagttaccccatccttcgttgccttc 16889
Query: 527 actccagaagaaagattgatcggtgatgctgttaag-accaaactggtttgaaccccaaa 585
||||||||||||||||||||||||||||||| |||| ||||| ||| ||||||||| |||
Sbjct: 16888 actccagaagaaagattgatcggtgatgctgctaagaaccaagctgctttgaacccaaaa 16829
Query: 586 aacaccgtttttgatgcttaacgtttaattggttgaagatttcgatgaagaattttccca 645
|||||||| || |||||| | |||||||||||| ||||| ||||||||||||| | |||
Sbjct: 16828 aacaccgtcttcgatgctaagcgtttaattggtagaaga-ttcgatgaagaatctgtcca 16770
Query: 646 ttctgcattgaagacctggcctttcaaggtttttactttcaacgatgcccccttggattg 705
|||| ||||||||||||| ||||||||| | | |||||||||||| || |||||
Sbjct: 16769 atctgacatgaagacctggccattcaaggttatcgactccaacgatgccccatt-gattg 16711
Query: 706 aagttgaaatatttgggggaaaccaaaacctttt 739
|||||| |||||||||| ||||||||||||||||
Sbjct: 16710 aagttg-aatatttgggtgaaaccaaaacctttt 16678
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9646
Number of Sequences: 1807
Number of extensions: 9646
Number of successful extensions: 105
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)