BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZB05FM1.SCF screened BAC_end
(995 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1708 1096 0.0
>3x_Contig1708
Length = 19451
Score = 1096 bits (553), Expect = 0.0
Identities = 619/632 (97%), Gaps = 7/632 (1%)
Strand = Plus / Minus
Query: 87 ataaatcaactagtttatcattccatattagaagaatgtgaaaacagctacaggtatgga 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9850 ataaatcaactagtttatcattccatattagaagaatgtgaaaacagctacaggtatgga 9791
Query: 147 cttttccagatgagcccagatgatgtatcaaaaaatatcccttggttcacaacaaatagc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9790 cttttccagatgagcccagatgatgtatcaaaaaatatcccttggttcacaacaaatagc 9731
Query: 207 ataatagaaaatcttaatgacatcttcttcttgttaaggcatgcctctgaagatcttgcc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9730 ataatagaaaatcttaatgacatcttcttcttgttaaggcatgcctctgaagatcttgcc 9671
Query: 267 gttgtgtcagaatttgtagaggaattactgctattggttaagtctctattttatatggtc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9670 gttgtgtcagaatttgtagaggaattactgctattggttaagtctctattttatatggtc 9611
Query: 327 aggcaaataaccatgtggattgatgcaaatgccattactgattctagttataaacagttt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9610 aggcaaataaccatgtggattgatgcaaatgccattactgattctagttataaacagttt 9551
Query: 387 ttcgaagaaaatcatttactttggaatagggtccttagggatgntaacaggtctcaggat 446
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 9550 ttcgaagaaaatcatttactttggaatagggtccttagggatgttaacaggtctcaggat 9491
Query: 447 tcaattctaatcacagatttttaccaagactttgaaggcttagttgaaacttttgcatct 506
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 9490 tcaattctaatcacagatttttaccaagactttgaaggcttagttgaaactttgcaatct 9431
Query: 507 ctgccaaaaa-taccgcattctctctatacgatgaattcttccagaaatacggatacgac 565
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9430 ctgccaaaaattaccgcattctctctatacgatgaattcttccagaaatacggatacgac 9371
Query: 566 tttgcaaaatccttatttttctactatatcaaggaagggctnatgggatgatctttacga 625
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 9370 tttgcaaaatccttattttcctactatatcaaggaagggct-atgggatgatctttacga 9312
Query: 626 atcgtttggtgaaacccattcagaatatttggacccagttcttaagagaatgttcccgag 685
||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||
Sbjct: 9311 atcgtttggtgaaacccattcagaatatttgga-ccagttcttaggagaatg-tcccgag 9254
Query: 686 tattggcaaaagttaaatggatttggaaacat 717
|| |||| ||||||||||||| ||||||||||
Sbjct: 9253 ta-tggc-aaagttaaatgga-ttggaaacat 9225
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,434
Number of Sequences: 1807
Number of extensions: 13434
Number of successful extensions: 91
Number of sequences better than 1.0e-20: 1
length of query: 995
length of database: 10,358,551
effective HSP length: 16
effective length of query: 979
effective length of database: 10,329,639
effective search space: 10112716581
effective search space used: 10112716581
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)