BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZB05RM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig849 1223 0.0
>3x_Contig849
Length = 3479
Score = 1223 bits (617), Expect = 0.0
Identities = 651/661 (98%), Gaps = 1/661 (0%)
Strand = Plus / Plus
Query: 47 tagatcagcaatatgtttcaagttaatcttttctggcgtctcagttctgttaatattttt 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2819 tagatcagcaatatgtttcaagttaatcttttctggcgtctcagttctgttaatattttt 2878
Query: 107 ttttggttagtatcgttgcaatttagccgccgaaacttggaaatatagaataaggtaaaa 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2879 ttttggttagtatcgttgcaatttagccgccgaaacttggaaatatagaataaggtaaaa 2938
Query: 167 catacatatgtaattcgtgagccaacgtctgaaatttcttctctaattcctggtaagata 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2939 catacatatgtaattcgtgagccaacgtctgaaatttcttctctaattcctggtaagata 2998
Query: 227 ccttaagggcagcgagtcgctgctgtttacgatttaaacgatcctcaacgcccattatgt 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2999 ccttaagggcagcgagtcgctgctgtttacgatttaaacgatcctcaacgcccattatgt 3058
Query: 287 tactctttgccctttttctgtgtatatagttcctcatctgtagatttcaatgttgtttgt 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3059 tactctttgccctttttctgtgtatatagttcctcatctgtagatttcaatgttgtttgt 3118
Query: 347 agaagataaatatcagaaaatgatatggagaaattaataatggaaacataatttgcatta 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3119 agaagataaatatcagaaaatgatatggagaaattaataatggaaacataatttgcatta 3178
Query: 407 atacataaagcccatcagacaatgctgatagaataatggtatagatatatatctggaaga 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3179 atacataaagcccatcagacaatgctgatagaataatggtatagatatatatctggaaga 3238
Query: 467 gaattaaatgctaaacataggcgtgtatatatactaattcatgttgaagtttcaggtcga 526
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 3239 gaattaaatgctaaacataggcgtgtatatatactaattcatgttgaagtttcagggcga 3298
Query: 527 gtaatatgactgactgtctgtagaactagcgagtcttgattataccagcggcgatcaagg 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 3299 gtaatatgactgactgtctgtagaactagcgagtcttgattataccagcggcgattaagg 3358
Query: 587 tttgaatcttcttgaagacgtctgggtttctcatgtgttccctgtaagcagcaggatttt 646
||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 3359 tttgaattttcttgaagacgtctgggtttctcatgtgttcctttaaagcagcaggatttt 3418
Query: 647 gctgagcttgtgagagtatagattgca-tgacagggtcttgttaaaatgatgcaacttct 705
||||||||| ||||||||||||||||| |||||||||||||| ||| |||||||||||||
Sbjct: 3419 gctgagcttttgagagtatagattgcattgacagggtcttgtaaaattgatgcaacttct 3478
Query: 706 g 706
|
Sbjct: 3479 g 3479
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7575
Number of Sequences: 1807
Number of extensions: 7575
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)