BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC44ZB06FM1.SCF screened BAC_end
         (902 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1724                                                         654   0.0  

>3x_Contig1724 
          Length = 20938

 Score =  654 bits (330), Expect = 0.0
 Identities = 519/573 (90%), Gaps = 7/573 (1%)
 Strand = Plus / Minus

                                                                        
Query: 97   catttttgatgttcgaatatacatgctatatgaataatgattaaatgagaaagtatatgt 156
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8689 catttttgatgttcgaatatacatgctatatgaataatgattaaatgagaaagtatatgt 8630

                                                                        
Query: 157  acgaagttcttaaaacttggtgtttttagttattgattttgcataataagaatcctttct 216
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8629 acgaagttcttaaaacttggtgtttttagttattgattttgcataataagaatcctttct 8570

                                                                        
Query: 217  tttcttcaatccacttgnttttattttcttttgtattatactttgcctctttgctctttc 276
            | ||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 8569 tctcttcaatccacttgtttttattttcttttgtattatacttttcctcttttctctttc 8510

                                                                        
Query: 277  gtatatacac-gtacttaatttggagttcacttccgatcattagaagcataacgagaacg 335
            |||||||||| |||  | ||| | |||  ||| | |||||||||||||||||||||||||
Sbjct: 8509 gtatatacacggtatatgattcgaagtcaactacggatcattagaagcataacgagaacg 8450

                                                                        
Query: 336  atgtctacttcatctgaagcagtgccaaattccggtggtaaattgcagtttaccttgaag 395
            ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 8449 atgtctactccatctgaagcagtgccaaaatccggtggtaaattgcagtttaccttgaag 8390

                                                                        
Query: 396  acccctaaaggtaccaaggactgtgctgaaaa-gatttggttatcagagaagccattttt 454
            |||||||| |||||||||||||| |||||||| ||| ||||||||||||| |||||||||
Sbjct: 8389 acccctaagggtaccaaggactgggctgaaaaggatatggttatcagagaggccattttt 8330

                                                                        
Query: 455  agtcaatttgtcctctttgttc-agagacacgggggtattacattggatacacctgtctt 513
            |||||| ||||| ||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 8329 agtcaa-ttgtcgtctttgttcaagagacacggtggtattacattggatacacctgtctt 8271

                                                                        
Query: 514  cgaactacttaagat-ctacctgttagttacgggaaggattcc-agttaa-ttataactt 570
            |||||||| | |||| ||| ||| ||  |||||  |||||||| |||||| |||||||||
Sbjct: 8270 cgaactacgtgagatcctagctggtaagtacggtgaggattccaagttaatttataactt 8211

                                                                        
Query: 571  gaaagatcaagggggtgaactttttttttttggttataacttgacccttccctttggtaa 630
            | |||||||||| |||||||| | || |||  ||||| |||||||| |||| |||| || 
Sbjct: 8210 ggaagatcaaggtggtgaactatgttctttgcgttatgacttgaccgttccatttgctag 8151

                                             
Query: 631  aaattttgcccttaacaaggttcaatcctttaa 663
            | || ||||| | ||||| ||||||||| ||||
Sbjct: 8150 atatgttgccatgaacaatgttcaatccattaa 8118


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,158
Number of Sequences: 1807
Number of extensions: 15158
Number of successful extensions: 100
Number of sequences better than 1.0e-20: 1
length of query: 902
length of database: 10,358,551
effective HSP length: 16
effective length of query: 886
effective length of database: 10,329,639
effective search space: 9152060154
effective search space used: 9152060154
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)