BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZB07RM1.SCF screened BAC_end
(910 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1553 1417 0.0
>3x_Contig1553
Length = 8593
Score = 1417 bits (715), Expect = 0.0
Identities = 787/807 (97%), Gaps = 3/807 (0%)
Strand = Plus / Minus
Query: 47 cttattgggaaatccttactgtcccattttggacatttcctatgacattctaaaataggg 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5452 cttattgggaaatccttactgtcccattttggacatttcctatgacattctaaaataggg 5393
Query: 107 tatcggttctaataaaaaaattagtaatctcagtatacctatattaaaagaccgcacaat 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5392 tatcggttctaataaaaaaattagtaatctcagtatacctatattaaaagaccgcacaat 5333
Query: 167 caataccacaaaggacaatcgatacactccataaagacaaccaaaggaaaccaaaaaaaa 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5332 caataccacaaaggacaatcgatacactccataaagacaaccaaaggaaaccaaaaaaaa 5273
Query: 227 tgtcaccgaatctatttggaatcttcagagattatccgacaccaccagaatcagggttct 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5272 tgtcaccgaatctatttggaatcttcagagattatccgacaccaccagaatcagggttct 5213
Query: 287 ggggtactcctacttctactatagattggtgtgaggagaattatgtgatatcgccctata 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5212 ggggtactcctacttctactatagattggtgtgaggagaattatgtgatatcgccctata 5153
Query: 347 tagcggaatggtcaaacacactcactaatagtggatttattttactagcattatacctgt 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5152 tagcggaatggtcaaacacactcactaatagtggatttattttactagcattatacctgt 5093
Query: 407 tgtattcttcatggaaaaataaactagagacccggtttaagttggtttgtgctggttttg 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5092 tgtattcttcatggaaaaataaactagagacccggtttaagttggtttgtgctggttttg 5033
Query: 467 gattggtcgggatcggatcctggttattccatatgactttgcaatacaagtaccagttat 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5032 gattggtcgggatcggatcctggttattccatatgactttgcaatacaagtaccagttat 4973
Query: 527 tagatgagttacctatggtttatgctacttgcattcctgcatggagcatattctgcgagg 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4972 tagatgagttacctatggtttatgctacttgcattcctgcatggagcatattctgcgagg 4913
Query: 587 agattgatgtagctacgtcgaggatcaggtctcccaccaggagaaaacaatggactgtcg 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4912 agattgatgtagctacgtcgaggatcaggtctcccaccaggagaaaacaatggactgtcg 4853
Query: 647 gattaaccatctttatgggtgctaatttacttacggctatatacctcattttcaagattt 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 4852 gattaaccatctttatgggtgctaatttacttacggctatatacctcattttcaagaatc 4793
Query: 707 caacgatccatcaggctggttacgcttctattaacgcctattgttatttggtttgccttc 766
|||||||||||||||||||||||||| || |||| |||| ||||||||||||||||||
Sbjct: 4792 caacgatccatcaggctggttacgctctaatcaacg-ctatcgttatttggtttgccttc 4734
Query: 767 aaactcaccaaccgttttgtaaacgatccggttgccaaaacttaacctacaaaaggctat 826
|||||||||| | ||||||||||||||||||| | |||| |||||||||||| |||||
Sbjct: 4733 aaactcaccacacagtttgtaaacgatccggttg-ctaaacgtaacctacaaaatgctat 4675
Query: 827 gttaacttgggatacccatatttctgg 853
||| |||||| || ||||||||||||
Sbjct: 4674 gtt-acttggtatcaccatatttctgg 4649
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5641
Number of Sequences: 1807
Number of extensions: 5641
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 910
length of database: 10,358,551
effective HSP length: 16
effective length of query: 894
effective length of database: 10,329,639
effective search space: 9234697266
effective search space used: 9234697266
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)