BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZB08FM1.SCF screened BAC_end
(966 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig220 839 0.0
>3x_Contig220
Length = 1055
Score = 839 bits (423), Expect = 0.0
Identities = 447/451 (99%), Gaps = 3/451 (0%)
Strand = Plus / Minus
Query: 87 tataataaacagtctgattatcataagagaaggttccttaggaatttggatgaagaagtg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 tataataaacagtctgattatcataagagaaggttccttaggaatttggatgaagaagtg 398
Query: 147 gatgaagagcaagtgaaagatgtgaaaagaaggaaaaccgataaggatggtgataaggaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gatgaagagcaagtgaaagatgtgaaaagaaggaaaaccgataaggatggtgataaggaa 338
Query: 207 gaggaaagtggcggtggatatacgatgcccaagacttcgcagcatattataactgagctc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gaggaaagtggcggtggatatacgatgcccaagacttcgcagcatattataactgagctc 278
Query: 267 tcggaagagatggttactgaagttccaggggtacgtaatcttcagttctttaagccttca 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tcggaagagatggttactgaagttccaggggtacgtaatcttcagttctttaagccttca 218
Query: 327 gacagacaacatttcgcaattttgtttgatgaaaggtctccagaagatatgactgaagag 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 gacagacaacatttcgcaattttgtttgatgaaaggtctccagaagatatgactgaagag 158
Query: 387 gaaaggaaacagaaacaggttttaaaattggtacttaaggtgaaaaatgggttaccaagc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 gaaaggaaacagaaacaggttttaaaattggtacttaaggtgaaaaatgggttaccaagc 98
Query: 447 tctaggaaaatagctctcagagcactcactcaaaaggcacc-ctcttt-cggggcaccat 504
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 97 tctaggaaaatagctctcagagcactcactcaaaaggcacctctctttgcggggcaccat 38
Query: 505 tgtt-atttgattcgatcttgcccattcttc 534
|||| ||||||||| ||||||||||||||||
Sbjct: 37 tgttgatttgattctatcttgcccattcttc 7
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7380
Number of Sequences: 1807
Number of extensions: 7380
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 966
length of database: 10,358,551
effective HSP length: 16
effective length of query: 950
effective length of database: 10,329,639
effective search space: 9813157050
effective search space used: 9813157050
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)