BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC44ZB09FM1.SCF screened BAC_end
         (908 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1774                                                        1122   0.0  

>3x_Contig1774 
          Length = 27771

 Score = 1122 bits (566), Expect = 0.0
 Identities = 656/677 (96%), Gaps = 7/677 (1%)
 Strand = Plus / Minus

                                                                         
Query: 86    atcaaatgatttttaagataaaaaggtagaccaaaataataataccaaacaaacccaatc 145
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16951 atcaaatgatttttaagataaaaaggtagaccaaaataataataccaaacaaacccaatc 16892

                                                                         
Query: 146   gggactaaataagatcccagtaagactcaccgaaccaacatgtcctcacttgacatcaat 205
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16891 gggactaaataagatcccagtaagactcaccgaaccaacatgtcctcacttgacatcaat 16832

                                                                         
Query: 206   gagcaacgtgctcttataaagtctgctcacagatacatctcagagaaactcgaggatcac 265
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16831 gagcaacgtgctcttataaagtctgctcacagatacatctcagagaaactcgaggatcac 16772

                                                                         
Query: 266   ttctcatccgagtttttaccaaaggctcttgtgatttgtggatctggtttaagtggaatc 325
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16771 ttctcatccgagtttttaccaaaggctcttgtgatttgtggatctggtttaagtggaatc 16712

                                                                         
Query: 326   tcaaccaagatcgctgatgaaccaaagccattgattctgtcttattcgaccattcctggc 385
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16711 tcaaccaagatcgctgatgaaccaaagccattgattctgtcttattcgaccattcctggc 16652

                                                                         
Query: 386   ttcaaagtcagcaccgtacctggacatagtggtgagttgatctttggctacatgaacggt 445
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16651 ttcaaagtcagcaccgtacctggacatagtggtgagttgatctttggctacatgaacggt 16592

                                                                         
Query: 446   gcgcctgtcgtcttaatgaatggccgtttgcattcttatgagggccattccttagcagaa 505
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16591 gcgcctgtcgtcttaatgaatggccgtttgcattcttatgagggccattccttagcagaa 16532

                                                                         
Query: 506   acagtgcatcctatccgtgcattgcacttgttggggtcaatcaatgntcttgatcgtaac 565
             |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 16531 acagtgcatcctatccgtgcattgcacttgttggggtcaatcaatg-tcttgatcgtaac 16473

                                                                         
Query: 566   aaatgcagccgggtggtatcaatgcctcctttaaggctggngatttaatgtgtgtctacg 625
             |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 16472 aaatgcagcc-ggtggtatcaatgcctcctttaaggctggggatttaatgtgtgtctacg 16414

                                                                         
Query: 626   accatatcaatttccca-gaatatgcgggttccatcctttaa-gggagct-attttgacc 682
             ||||||||||||||||| || ||||||||||||||||| ||| ||||||| |||||||| 
Sbjct: 16413 accatatcaatttcccaggattatgcgggttccatcctctaaggggagctaattttgacg 16354

                                                                         
Query: 683   aa-ttggggcaagattttgggcta-cagtgaggcttatgactgggaactaccgaagcttt 740
             || ||||| ||||||| | ||||| |||||| |||||||||| ||||||||  ||||| |
Sbjct: 16353 aatttgggccaagattcttggctaccagtgatgcttatgacttggaactacgtaagctat 16294

                              
Query: 741   tggtttcaaaaaaaaaa 757
             || ||||||| ||||||
Sbjct: 16293 tgttttcaaagaaaaaa 16277


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,162
Number of Sequences: 1807
Number of extensions: 10162
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 908
length of database: 10,358,551
effective HSP length: 16
effective length of query: 892
effective length of database: 10,329,639
effective search space: 9214037988
effective search space used: 9214037988
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)