BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZB09RM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1659 1289 0.0
>3x_Contig1659
Length = 17570
Score = 1289 bits (650), Expect = 0.0
Identities = 779/813 (95%), Gaps = 9/813 (1%)
Strand = Plus / Plus
Query: 48 tatgatttgtgtagaggtagcagtcataagcagagaggaaaatcttatactctcacgtga 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12177 tatgatttgtgtagaggtagcagtcataagcagagaggaaaatcttatactctcacgtga 12236
Query: 108 tcagaaacagtagccacttcatcggagtccgaactgataacagttggtctttgatctttt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12237 tcagaaacagtagccacttcatcggagtccgaactgataacagttggtctttgatctttt 12296
Query: 168 atgtcagctttcaaagccaaagcatagctgtatgcgttaacggatggttgtgtcttgtat 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12297 atgtcagctttcaaagccaaagcatagctgtatgcgttaacggatggttgtgtcttgtat 12356
Query: 228 tgtaaacccaaagtatgtagttgttttgggaaagttgtagatttgatggttttctttgga 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12357 tgtaaacccaaagtatgtagttgttttgggaaagttgtagatttgatggttttctttgga 12416
Query: 288 atgtagcacttagaagaagtgtttaacaatttaatagagttggtgaacattttttcttga 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12417 atgtagcacttagaagaagtgtttaacaatttaatagagttggtgaacattttttcttga 12476
Query: 348 tagttttgtgtgtaagtgatgctttttgatgaaatctgttgctattcaatagacttttga 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12477 tagttttgtgtgtaagtgatgctttttgatgaaatctgttgctattcaatagacttttga 12536
Query: 408 ttgatgaggtgggagtgaatataatatacaatataaaagaacaacagatgacatccataa 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12537 ttgatgaggtgggagtgaatataatatacaatataaaagaacaacagatgacatccataa 12596
Query: 468 gttacaagacactcaactatgaaccagctccttatatatatttttccttgaaccaaagat 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12597 gttacaagacactcaactatgaaccagctccttatatatatttttccttgaaccaaagat 12656
Query: 528 cccacatgttctttccaggtttcaagggccattggccgtaacctgattttgtaaatagat 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12657 cccacatgttctttccaggtttcaagggccattggccgtaacctgattttgtaaatagat 12716
Query: 588 aagggacattggccgtagagtggggtaatagaagtatannttata--tataataataata 645
||||||||||||||||||||| |||||||| |||| | ||| ||||||||||||
Sbjct: 12717 aagggacattggccgtagagt-gggtaataagagtaataataataataataataataata 12775
Query: 646 gtactaatatttttttattctttcgtncagaacaatnaattagtaagggcatttcgacgt 705
||||||||||||||||| |||||||| |||| |||| ||||||||| |||||||||||||
Sbjct: 12776 gtactaatattttttta-tctttcgtccagaccaat-aattagtaa-ggcatttcgacgt 12832
Query: 706 atcgaaagcaacacctttgaatcanngagattccaagcaaaagaagatactttagtccat 765
|||||| |||||||| ||||| ||||| | ||||||||||||||||||||||||||
Sbjct: 12833 atcgaagcaaacaccttgaaatca-ggagatccaaagcaaaagaagatactttagtccat 12891
Query: 766 tggtggaatatgcactttactatgagtaggtacgttacgtgattaatctctgat-cactt 824
|| |||| ||||||||||||||||||||| |||||||||||||| ||||||||| |||||
Sbjct: 12892 tgttggattatgcactttactatgagtagttacgttacgtgatt-atctctgatccactt 12950
Query: 825 tttttttttttcttttctggcctttttggcttt 857
|||||||||| |||||| |||||||||||||
Sbjct: 12951 ttttttttttctctttctgtcctttttggcttt 12983
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,059
Number of Sequences: 1807
Number of extensions: 16059
Number of successful extensions: 326
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)