BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZB10RM1.SCF screened BAC_end
(908 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig813 737 0.0
>3x_Contig813
Length = 3136
Score = 737 bits (372), Expect = 0.0
Identities = 523/558 (93%), Gaps = 14/558 (2%)
Strand = Plus / Minus
Query: 50 cttagtaacttaacttatgctcgctagcgatccataaaatgccacaggtacatcgaagca 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1619 cttagtaacttaacttatgctcgctagcgatccataaaatgccacaggtacatcgaagca 1560
Query: 110 agtaagcctttcatggctgggatctttgatgtattccgaaaaaaacaattctcaaattgc 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1559 agtaagcctttcatggctgggatctttgatgtattccgaaaaaaacaattctcaaattgc 1500
Query: 170 ttaaggtttgtcttcgtatctttcaaaaccattcatgctcgcaggcaacaaagcgaaaaa 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1499 ttaaggtttgtcttcgtatctttcaaaaccattcatgctcgcaggcaacaaagcgaaaaa 1440
Query: 230 aaaacataaatatcggcatctttggatgaggcgcatcagtacagttgcatgagcgtatta 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1439 aaaacataaatatcggcatctttggatgaggcgcatcagtacagttgcatgagcgtatta 1380
Query: 290 ttattcttgtttatacttgtgtgtttcgctcatgcatcctaatgttactgttgaggaagg 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1379 ttattcttgtttatacttgtgtgtttcgctcatgcatcctaatgttactgttgaggaagg 1320
Query: 350 aaagaaggtaaaagaaaaaacgcaaaccagctactgcaaacttttcatttgaattttttt 409
||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||
Sbjct: 1319 aaagagggtaaaagaaaaaacgcaaaccagctactgc-aacttttcatttgaa-tttctt 1262
Query: 410 cccgtctccagcttataaatatatttattacctttcccacattcaagtgttttaccttgc 469
||||||||||||||||||||||| |||| ||| ||||||||| |||||| | ||| ||||
Sbjct: 1261 cccgtctccagcttataaatata-ttatcacc-ttcccacatccaagtg-tctacgttgc 1205
Query: 470 cgaacatttagtgaaaccccgatgggctttttgaaatagatttgaaacttaaaattcatt 529
| ||||| |||| ||||||||| ||||||||| |||||||||||| ||| ||||| |
Sbjct: 1204 ag-acattaagtg-aaccccgataggctttttg-aatagatttgaa--ctaagattcaat 1150
Query: 530 tcaaattcttgttatttccaggtacctttcaaaaaaaaggggaaactttaacctgcaaaa 589
||| |||| ||||| ||||||||| | |||| | ||| ||| ||| || ||||||||||
Sbjct: 1149 tcagattc-tgttaattccaggta-cattcagacaaa--ggggaacgttcacctgcaaaa 1094
Query: 590 aaaaaataaaagtttgat 607
||||||||||||| ||||
Sbjct: 1093 aaaaaataaaagtctgat 1076
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 36,582
Number of Sequences: 1807
Number of extensions: 36582
Number of successful extensions: 2763
Number of sequences better than 1.0e-20: 1
length of query: 908
length of database: 10,358,551
effective HSP length: 16
effective length of query: 892
effective length of database: 10,329,639
effective search space: 9214037988
effective search space used: 9214037988
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)