BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZB12RM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1166 1142 0.0
>3x_Contig1166
Length = 5040
Score = 1142 bits (576), Expect = 0.0
Identities = 715/748 (95%), Gaps = 10/748 (1%)
Strand = Plus / Minus
Query: 43 gctttacat-aggtttgggtggataaacatactagtcaattggaaagaatatacaaaaag 101
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1820 gctttacatcaggtttgggtggaaaaacatactagtcaattggaaagaatatacaaaaag 1761
Query: 102 aaagttttacagttaagctctgattgcataaaaattgatgagaacattgatacctttgct 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1760 aaagttttacagttaagctctgattgcataaaaattgatgagaacattgatacctttgct 1701
Query: 162 gttgtaaaacataaactaccgaaaagtgtcaaactttcccccgaaaaaaaccctatctta 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 1700 gttgtaaaacataaactaccgaaaagtgtcaaactttcccccgaaaaaaaccctaacaaa 1641
Query: 222 cgattgaaacttttttcaaacaatatttaatgtgacgctgctattaaaaagttggtcagc 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1640 cgattgaaacttttttcaaacaatatttaatgtgacgctgctattaaaaagttggtcagc 1581
Query: 282 tttgaatctgtttgtttatatatacataaagtgccattggtgaagatactctctttgtta 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1580 tttgaatctgtttgtttatatatacataaagtgccattggtgaagatactctctttgtta 1521
Query: 342 cacgctcttttcgtgtcatagtgttttgtttcttgatttatccgtccaatattttctatg 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1520 cacgctcttttcgtgtcatagtgttttgtttcttgatttatccgtccaatattttctatg 1461
Query: 402 ctcatcgctttcatttttttttgtttttctctcatatatcaaatacagttggcaatacaa 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1460 ctcatcgctttcatttttttttgtttttctctcatatatcaaatacagttggcaatacaa 1401
Query: 462 aaaaaattaacttaagacgacatccaaagaattaaggcactttccagttatgctttttgt 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1400 aaaaaattaacttaagacgacatccaaagaattaaggcactttccagttatgctttttgt 1341
Query: 522 attgcactgagccgctctttgtttctttttactgccatcttcactaacattcgactta-t 580
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct: 1340 attgcactgagccgctctttgtttcttttcactgccatcttcactaacattcgacttatt 1281
Query: 581 ttttacacaaattgt-agccctcagccagcaaaaca-tactgtttaccaaa-ttgtttgg 637
|||||||| |||||| |||||||||||||||||||| |||||||||||||| ||||| |
Sbjct: 1280 ttttacac-aattgtaagccctcagccagcaaaacattactgtttaccaaatttgttgtg 1222
Query: 638 tgagggttgtgcatttgcctcatgaataa-gtaaaatc-ataagcagtgccatctctaaa 695
||||| |||||||||||| |||||||||| |||||||| ||||||||||| |||||||||
Sbjct: 1221 tgaggtttgtgcatttgcgtcatgaataaggtaaaatcaataagcagtgcgatctctaaa 1162
Query: 696 c-aaaagtggctttttttttatacaatc-atcatatttttttttgttaagagaaactttg 753
| |||||| |||| || || |||| ||| ||||||| | | ||||||||||||||| |||
Sbjct: 1161 caaaaagttgcttcttcttcatacgatcaatcatatctctctttgttaagagaaaccttg 1102
Query: 754 gatgaagaattattggcaaatcgtgggt 781
|||||||| |||||| | |||||||||
Sbjct: 1101 gatgaagagttattgcgagatcgtgggt 1074
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,343
Number of Sequences: 1807
Number of extensions: 11343
Number of successful extensions: 130
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)