BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZC01FM1.SCF screened BAC_end
(955 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1507 924 0.0
>3x_Contig1507
Length = 11359
Score = 924 bits (466), Expect = 0.0
Identities = 519/535 (97%), Gaps = 2/535 (0%)
Strand = Plus / Minus
Query: 87 cattcgatgatgcaagaatgatagccaaatcatcgatcttcttaccgcaatttttgcatg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7554 cattcgatgatgcaagaatgatagccaaatcatcgatcttcttaccgcaatttttgcatg 7495
Query: 147 agtccgagcactcgaaacatatgagatcacttgtacccagaactaagaaatccgagtcac 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7494 agtccgagcactcgaaacatatgagatcacttgtacccagaactaagaaatccgagtcac 7435
Query: 207 aacttagaggcttatcacatttgtagcaggagaaacagtgggtgtgccatctatttccgc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7434 aacttagaggcttatcacatttgtagcaggagaaacagtgggtgtgccatctatttccgc 7375
Query: 267 ctaattcgtacgcatgacccatagtaatatggttcgtacaacgaacacatactgacgtct 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7374 ctaattcgtacgcatgacccatagtaatatggttcgtacaacgaacacatactgacgtct 7315
Query: 327 cagcagccctcttcggagaggcagacatacggtaattagttttgcagatgtagcacgctg 386
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7314 cagcagcccccttcggagaggcagacatacggtaattagttttgcagatgtagcacgctg 7255
Query: 387 tggaggtgatggtcttgtagtgtgttcggttgtccctggatcaataactttttgatctaa 446
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 7254 tggaggtgatggtcttgtagtgtgttcgtttgtccctggatcaataactttttgatctaa 7195
Query: 447 tggatcannaagctg-aaagaaatctaagattaatcttcgaatcgaaagtntgataataa 505
||||||| |||||| |||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 7194 tggatca-aaagctgaaaagaaatctaagattaatcttcgaatcgaaagtataataataa 7136
Query: 506 cacgacacgcacaaagagcacgacacaccaaaaaaaanaaaaagtttatagagagatgta 565
|| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 7135 cagaacacgcacaaagagcacgacacaccaaaaaaaaaaaaaagttaatagagagatgta 7076
Query: 566 ttagcagcggctttatactatgatattgtcttgcccgccacggttagagagtact 620
||||||||||||||||||||||||||| ||||||| ||| |||||||||||||
Sbjct: 7075 ttagcagcggctttatactatgatattttcttgccacgcaccgttagagagtact 7021
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5716
Number of Sequences: 1807
Number of extensions: 5716
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 955
length of database: 10,358,551
effective HSP length: 16
effective length of query: 939
effective length of database: 10,329,639
effective search space: 9699531021
effective search space used: 9699531021
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)