BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZC01RM1.SCF screened BAC_end
(903 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig589 1118 0.0
>3x_Contig589
Length = 2261
Score = 1118 bits (564), Expect = 0.0
Identities = 761/803 (94%), Gaps = 19/803 (2%)
Strand = Plus / Minus
Query: 104 tcatctgctggttcaccgtcatctgtgaagtcggcttcttcatcactatcttcaatgaat 163
|||||||||||| ||||||||||||| ||||||||| ||||||||||||||| |||||
Sbjct: 2260 tcatctgctggt-caccgtcatctgt-aagtcggctc--tcatcactatcttca-tgaat 2206
Query: 164 tcttttgaaagtggtctggacttacctctcttagagtcaccattttgaactccgttcaat 223
||||| |||||||||||||||| |||||||||||| |||||||||||| |||||||||||
Sbjct: 2205 tcttt-gaaagtggtctggact-acctctcttaga-tcaccattttga-ctccgttcaat 2150
Query: 224 tgatcatcatcctcatcatcttcatcaacgatttttttggcagttcttctctttttcttt 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2149 tgatcatcatcctcatcatcttcatcaacgatttttttggcagttcttctctttttcttt 2090
Query: 284 gaagatttactatcagagtctgcttttctctttgctttcttccctttcttagatggtgct 343
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 2089 gaagatttactatcagagtctgcttttctctttgctttcttccctgtcttagatggtgct 2030
Query: 344 ttataagacccgtcttcttcttgaggtaggtcatcgttgtcattgtcgtcatcaacaatc 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2029 ttataagacccgtcttcttcttgaggtaggtcatcgttgtcattgtcgtcatcaacaatc 1970
Query: 404 tcctcttgcgcggtacgttcttggatcaacctttgtgcttcttcttgcaattttctgtat 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1969 tcctcttgcgcggtacgttcttggatcaacctttgtgcttcttcttgcaattttctgtat 1910
Query: 464 tcctccgccagtttttcacttttgatcttttcttcttccttctgttgggcgtccctttga 523
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1909 tcctccgccagtttttcactgttgatcttttcttcttccttctgttgggcgtccctttga 1850
Query: 524 gcttcaagctcacgttgttcttccaaaactttacgagcattttccattatggctgagatt 583
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1849 gcttcaagctcacgttgttcttccaaaactttacgagcattttccattttggctgagatt 1790
Query: 584 tccaattcatacgcctttttgtcttctatactgcgctctagtgctgatttcattggtggt 643
||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||
Sbjct: 1789 tccaattcatacgccttttggtcttctatactgcgctctagtgctgttttca-tggtggt 1731
Query: 644 ctcacctagttgaatacgttgctctaattgttctgaa-gaactactatcgattaag-ttc 701
||||||||||||||||||||||||||||||||||||| ||| |||||| |||| || |||
Sbjct: 1730 ctcacctagttgaatacgttgctctaattgttctgaaggaattactatggatttagtttc 1671
Query: 702 cag-agttccttttataatgaaataccgcattgcaacccctcaatactgccttcagaatc 760
||| ||||| ||| |||||||||||||| |||||||||||||||||||| ||||| |||
Sbjct: 1670 cagaagttcttttaataatgaaataccgtattgcaacccctcaatactggcttcaagatc 1611
Query: 761 agccatggnttctttcttttagaactaggatcttttcatttgcttcggcaacttggaaat 820
|||||||| ||||||| ||||| |||| |||||| |||||||| |||||||||||| |||
Sbjct: 1610 agccatgg-ttctttc-tttaggacta-gatcttctcatttgc-tcggcaacttgg-aat 1556
Query: 821 tccaataatgcaaggttgaacttatagctactgttcattttacccctttactctcgcaga 880
||||||||||||||||||||||||||||||||| |||| ||| || |||||| |||||||
Sbjct: 1555 tccaataatgcaaggttgaacttatagctactggtcatctta-ccgtttactttcgcaga 1497
Query: 881 tacttaatcatacgcacgtttga 903
| || ||||||||||||||||||
Sbjct: 1496 ttctaaatcatacgcacgtttga 1474
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9322
Number of Sequences: 1807
Number of extensions: 9322
Number of successful extensions: 126
Number of sequences better than 1.0e-20: 1
length of query: 903
length of database: 10,358,551
effective HSP length: 16
effective length of query: 887
effective length of database: 10,329,639
effective search space: 9162389793
effective search space used: 9162389793
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)