BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZC02FM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1740 1191 0.0
>3x_Contig1740
Length = 21823
Score = 1191 bits (601), Expect = 0.0
Identities = 659/673 (97%), Gaps = 4/673 (0%)
Strand = Plus / Plus
Query: 86 gtctgcagcagacgcgataaagcctctgttggtagcctgtagataacgtttgtgagcttc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 gtctgcagcagacgcgataaagcctctgttggtagcctgtagataacgtttgtgagcttc 287
Query: 146 ttggtaagggaaagtagaagtggtagcaccgatttcggcacccatattacagatggtcgc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 ttggtaagggaaagtagaagtggtagcaccgatttcggcacccatattacagatggtcgc 347
Query: 206 catacctgtacaggatagagtgccaacaccttcaccgaaatattcaacgatgaaaccggt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 catacctgtacaggatagagtgccaacaccttcaccgaaatattcaacgatgaaaccggt 407
Query: 266 accacctcttacggttaagataccagccagtttggtgataacatcctttggagatgtcca 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 accacctcttacggttaagataccagccagtttggtgataacatcctttggagatgtcca 467
Query: 326 tccacttaagtgtcctgttaatttaacacccaaaatcttaggagctttcaattcccaagg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tccacttaagtgtcctgttaatttaacacccaaaatcttaggagctttcaattcccaagg 527
Query: 386 cgtgccggtcaaagcatcgactgcatcagcaccaccgacaccaatagcgattgcacctaa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 cgtgccggtcaaagcatcgactgcatcagcaccaccgacaccaatagcgattgcacctaa 587
Query: 446 cccaccagcgtttggagtgtgagaatcggtacccaacatcatcaaaccaggagcagagaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 cccaccagcgtttggagtgtgagaatcggtacccaacatcatcaaaccaggagcagagaa 647
Query: 506 -gttctctagcacgatttgatggataataccagaaccaggtccccagaactggataccat 564
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 ggttctctagcacgatttgatggataataccagaaccaggtccccagaactggataccat 707
Query: 565 atttggatgaacatgattgcaagaaatcgaagacttcttggtttgttgcaatggatgaca 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 atttggatgaacatgattgcaagaaatcgaagacttcttggtttgttgcaatggatgaca 767
Query: 625 ctaaatccttggctttaccgtcttttaccacgattagatgatcacattgaatagaaactg 684
||||||||||||||| ||||||||| | ||||||||||||||||| ||||||||| |||
Sbjct: 768 ctaaatccttggcttcaccgtctttaccaacgattagatgatcacagtgaatagaacctg 827
Query: 685 gaacagctgttttctggtaaccctgtagtccttaaactgtaaaaggaaccctttgtgcag 744
||||||||| ||||||||||||||||||| | | |||||||||| || || |||||||||
Sbjct: 828 gaacagctg-tttctggtaaccctgtagt-catgaactgtaaaa-gagccatttgtgcag 884
Query: 745 atgcatcttgcat 757
|||||||||||||
Sbjct: 885 atgcatcttgcat 897
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6299
Number of Sequences: 1807
Number of extensions: 6299
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)