BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZC02RM1.SCF screened BAC_end
(858 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1786 1336 0.0
>3x_Contig1786
Length = 33838
Score = 1336 bits (674), Expect = 0.0
Identities = 799/821 (97%), Gaps = 16/821 (1%)
Strand = Plus / Plus
Query: 34 agctttaca-cctgtctgtttcttttctttttcttgatactcaggatacctccaacagga 92
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24301 agctttacaacctgtctgtttcttttctttttcttgatactcaggatacctccaacagga 24360
Query: 93 ttgagaagcggattttcaaactccccgcgattctttccgaacatcatgcatttgcgaggg 152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24361 ttgagaagcggattttcaaactccccgcgattctttccgaacatcatgcatttgcgaggg 24420
Query: 153 tcaagaacaagacgggacaagtaggacaagtgagacaagacaagatgccaataggctttt 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24421 tcaagaacaagacgggacaagtaggacaagtgagacaagacaagatgccaataggctttt 24480
Query: 213 tttttcttttgtcctttttcttgctgctgagagataacagccgaaaagcagcatggggat 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24481 tttttcttttgtcctttttcttgctgctgagagataacagccgaaaagcagcatggggat 24540
Query: 273 aaaggacaagtggcaagaaagggacattcggaagagacagggtcgggacaaggacaggaa 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24541 aaaggacaagtggcaagaaagggacattcggaagagacagggtcgggacaaggacaggaa 24600
Query: 333 agaaaagtgcgatccttttggggccaaatggccaaatggacgtttgaccccctccgggtt 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24601 agaaaagtgcgatccttttggggccaaatggccaaatggacgtttgaccccctccgggtt 24660
Query: 393 gacagaagaacacgaaggacatttttccgtttccaatttgttccgaaaccctggtggcgt 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24661 gacagaagaacacgaaggacatttttccgtttccaatttgttccgaaaccctggtggcgt 24720
Query: 453 tttgtctaagccatttctcaccatgtcatgcaaaaaaattactcttaagagaaaaaatca 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24721 tttgtctaagccatttctcaccatgtcatgcaaaaaaattactcttaagagaaaaaatca 24780
Query: 513 ggttttccttttttgtttctttttcttttagagtctcactggaataccggaggagcgcga 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24781 ggttttccttttttgtttctttttcttttagagtctcactggaataccggaggagcgcga 24840
Query: 573 cgtatcctgatgtaacatgtaactgacaaaaatctataccttacgttaccctgctgatgc 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24841 cgtatcctgatgtaacatgtaactgacaaaaatctataccttacgttaccctgctgatgc 24900
Query: 633 ggctggcttctt-aaaatttgtctctttactttttgacctaggg--cactagaaagac-a 688
|||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 24901 ggctggcttcttaaaaatttgtctctttactttttgacctaggggcaactagaaagacaa 24960
Query: 689 gaatccggagaggagatttgggaagactgagcg-cacgtgattgaggtg-caaaatc-aa 745
|| || ||||||||||||||||| ||||||||| ||||||||||||||| ||||||| ||
Sbjct: 24961 gagtcgggagaggagatttgggaggactgagcgccacgtgattgaggtgccaaaatcaaa 25020
Query: 746 agaataatc-gcatt-gttcct-gtttgatgttggg-agtaaata-gcgatgcga-ggat 799
||||||||| ||||| |||||| ||||||||||||| |||| ||| ||||||||| ||||
Sbjct: 25021 agaataatcggcattggttcctggtttgatgttgggaagtagataggcgatgcgagggat 25080
Query: 800 tt-acatcacgtggatccaatt-actcattttttttgtttt 838
|| ||||||||||||| ||||| ||||||||||||||||||
Sbjct: 25081 ttcacatcacgtggattcaattaactcattttttttgtttt 25121
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8805
Number of Sequences: 1807
Number of extensions: 8805
Number of successful extensions: 98
Number of sequences better than 1.0e-20: 1
length of query: 858
length of database: 10,358,551
effective HSP length: 16
effective length of query: 842
effective length of database: 10,329,639
effective search space: 8697556038
effective search space used: 8697556038
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)