BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC44ZC03FM1.SCF screened BAC_end
         (902 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1676                                                        1074   0.0  

>3x_Contig1676 
          Length = 15800

 Score = 1074 bits (542), Expect = 0.0
 Identities = 596/608 (98%), Gaps = 5/608 (0%)
 Strand = Plus / Plus

                                                                        
Query: 88   aaaataaatcgttaagggcatgagtagactatataatctacatctcgtatataagattta 147
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1692 aaaataaatcgttaagggcatgagtagactatataatctacatctcgtatataagattta 1751

                                                                        
Query: 148  atctcttattaaaagaacagaatccgaacaccaagtaccagtgtatggatgcatttgaag 207
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1752 atctcttattaaaagaacagaatccgaacaccaagtaccagtgtatggatgcatttgaag 1811

                                                                        
Query: 208  ttaagtagcgatctgaaccatgcaggagcggcaaaaggaatccttgcattctaaagcgat 267
            ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1812 ttaagtagcgagcggaaccatgcaggagcggcaaaaggaatccttgcattctaaagcgat 1871

                                                                        
Query: 268  cctcgaaagagtaaaaccttaatcggagctttacaggttntctagtgatatttgccgaga 327
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1872 cctcgaaagagtaaaaccttaatcggagctttacaggttttctagtgatatttgccgaga 1931

                                                                        
Query: 328  gaaagtgtaaa-catgttgacaatcataaaagaagagtacatgtgcacattcacaggtct 386
            ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1932 gaa-gtgtaaaacatgttgacaatcataaaagaagagtacatgtgcacattcacaggtct 1990

                                                                        
Query: 387  aaagttcttanggtatcaaaaaaaaaaaaaacatttcgacaaagctggagcaacataatc 446
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1991 aaagttcttagggtatcaaaaaaaaaaaaaacatttcgacaaagctggagcaacataatc 2050

                                                                        
Query: 447  tcacttgttcttagacttctttcatactgatctgtaacgcggtttctggaacttgaccgc 506
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2051 tcacttgttcttagacttctttcatactgatctgtaacgcggtttctggaacttgaccgc 2110

                                                                        
Query: 507  tagagaattccttctatggtgatgatttgtgcatggagaagacaaatcgagtgaacattg 566
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2111 tagagaattccttctatggtgatgatttgtgcatggagaagacaaatcgagtgaacattg 2170

                                                                        
Query: 567  cgaagaatcatcttcagtgcatttggtggggaaatcgatcttgcatgcgtgcattgaatt 626
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2171 cgaagaatcatcttcagtgcatttggtggggaaatcgatcttgcatgcgtgcattgaatt 2230

                                                                        
Query: 627  cc-tggagaaacaggttgtttttaagtaatggaccttgaatca-aaggcgaaatgcctat 684
            || |||||||||||||||||||| ||||||||||||||| ||| |||||||| || ||||
Sbjct: 2231 ccttggagaaacaggttgtttttcagtaatggaccttgattcagaaggcgaattg-ctat 2289

                    
Query: 685  tgtattcg 692
            ||||||||
Sbjct: 2290 tgtattcg 2297


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,638
Number of Sequences: 1807
Number of extensions: 14638
Number of successful extensions: 353
Number of sequences better than 1.0e-20: 1
length of query: 902
length of database: 10,358,551
effective HSP length: 16
effective length of query: 886
effective length of database: 10,329,639
effective search space: 9152060154
effective search space used: 9152060154
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)