BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC44ZC03FM1.SCF screened BAC_end (902 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1676 1074 0.0 >3x_Contig1676 Length = 15800 Score = 1074 bits (542), Expect = 0.0 Identities = 596/608 (98%), Gaps = 5/608 (0%) Strand = Plus / Plus Query: 88 aaaataaatcgttaagggcatgagtagactatataatctacatctcgtatataagattta 147 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1692 aaaataaatcgttaagggcatgagtagactatataatctacatctcgtatataagattta 1751 Query: 148 atctcttattaaaagaacagaatccgaacaccaagtaccagtgtatggatgcatttgaag 207 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1752 atctcttattaaaagaacagaatccgaacaccaagtaccagtgtatggatgcatttgaag 1811 Query: 208 ttaagtagcgatctgaaccatgcaggagcggcaaaaggaatccttgcattctaaagcgat 267 ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1812 ttaagtagcgagcggaaccatgcaggagcggcaaaaggaatccttgcattctaaagcgat 1871 Query: 268 cctcgaaagagtaaaaccttaatcggagctttacaggttntctagtgatatttgccgaga 327 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 1872 cctcgaaagagtaaaaccttaatcggagctttacaggttttctagtgatatttgccgaga 1931 Query: 328 gaaagtgtaaa-catgttgacaatcataaaagaagagtacatgtgcacattcacaggtct 386 ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1932 gaa-gtgtaaaacatgttgacaatcataaaagaagagtacatgtgcacattcacaggtct 1990 Query: 387 aaagttcttanggtatcaaaaaaaaaaaaaacatttcgacaaagctggagcaacataatc 446 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1991 aaagttcttagggtatcaaaaaaaaaaaaaacatttcgacaaagctggagcaacataatc 2050 Query: 447 tcacttgttcttagacttctttcatactgatctgtaacgcggtttctggaacttgaccgc 506 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2051 tcacttgttcttagacttctttcatactgatctgtaacgcggtttctggaacttgaccgc 2110 Query: 507 tagagaattccttctatggtgatgatttgtgcatggagaagacaaatcgagtgaacattg 566 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2111 tagagaattccttctatggtgatgatttgtgcatggagaagacaaatcgagtgaacattg 2170 Query: 567 cgaagaatcatcttcagtgcatttggtggggaaatcgatcttgcatgcgtgcattgaatt 626 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2171 cgaagaatcatcttcagtgcatttggtggggaaatcgatcttgcatgcgtgcattgaatt 2230 Query: 627 cc-tggagaaacaggttgtttttaagtaatggaccttgaatca-aaggcgaaatgcctat 684 || |||||||||||||||||||| ||||||||||||||| ||| |||||||| || |||| Sbjct: 2231 ccttggagaaacaggttgtttttcagtaatggaccttgattcagaaggcgaattg-ctat 2289 Query: 685 tgtattcg 692 |||||||| Sbjct: 2290 tgtattcg 2297 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,638 Number of Sequences: 1807 Number of extensions: 14638 Number of successful extensions: 353 Number of sequences better than 1.0e-20: 1 length of query: 902 length of database: 10,358,551 effective HSP length: 16 effective length of query: 886 effective length of database: 10,329,639 effective search space: 9152060154 effective search space used: 9152060154 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)