BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZC03RM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1499 1586 0.0
>3x_Contig1499
Length = 7822
Score = 1586 bits (800), Expect = 0.0
Identities = 859/871 (98%), Gaps = 6/871 (0%)
Strand = Plus / Minus
Query: 41 gcttcagtaagcacttttttagcttagcatttaaaatgccaagcgctttcttaaattatt 100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2826 gcttcagtaagcacttttttagcttagcatttaaaatgccaagcgctttcttaaattatt 2767
Query: 101 gtgttttgattttcgatatatatgaatcctttaaacattgaacttcgaacttttcgaaaa 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2766 gtgttttgattttcgatatatatgaatcctttaaacattgaacttcgaacttttcgaaaa 2707
Query: 161 cgaaagctaaaagttgcatgatagagggaaagagagttgagctgagttgagagatatcta 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2706 cgaaagctaaaagttgcatgatagagggaaagagagttgagctgagttgagagatatcta 2647
Query: 221 cacttcacggctttgaaggttgaagttattctatcgaccaatctagtggtaaatccgata 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2646 cacttcacggctttgaaggttgaagttattctatcgaccaatctagtggtaaatccgata 2587
Query: 281 aaatcttttatcatcatgaaaccgtttttgacaggacactcagacctagtgcacgatatt 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2586 aaatcttttatcatcatgaaaccgtttttgacaggacactcagacctagtgcacgatatt 2527
Query: 341 agttatgacttttacggtcgtcgagtcgcaacatgttccagcgaccaacatatcaaggtg 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2526 agttatgacttttacggtcgtcgagtcgcaacatgttccagcgaccaacatatcaaggtg 2467
Query: 401 ttcaagctagacaaggaaacgaatgagtgggaattgagcgaaagttggaaggctcacgat 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2466 ttcaagctagacaaggaaacgaatgagtgggaattgagcgaaagttggaaggctcacgat 2407
Query: 461 agcagtattgtgtctcttgattgggccgcaccagaatttggtcgtatcatcgcgagtgtc 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2406 agcagtattgtgtctcttgattgggccgcaccagaatttggtcgtatcatcgcgagtgtc 2347
Query: 521 tcatacgataagactatcaaactatgggaggaggatccagatgcccttgagttatccgga 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2346 tcatacgataagactatcaaactatgggaggaggatccagatgcccttgagttatccgga 2287
Query: 581 aagcgttggcaaaaactttgtacgttgaacgatgcgacaggaccgttgttcagcgtaaaa 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2286 aagcgttggcaaaaactttgtacgttgaacgatgcgacaggaccgttgttcagcgtaaaa 2227
Query: 641 tttgctccatcgcatttgggactaaggctagctgcattggggaatgatggtaagttacgt 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2226 tttgctccatcgcatttgggactaaggctagctgcattggggaatgatggtaagttacgt 2167
Query: 701 ctttatgatgcgttagagtcttccgatctttagtcatggaccctgac-agcgagattacc 759
|||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 2166 ctttatgatgcgttagagtcttccgatcttaggtcatggaccctgacaagcgagattacc 2107
Query: 760 gtcttaaatactccacctgcatcacatctacaatcggnatttttgtctgttcctggtggt 819
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||
Sbjct: 2106 gtcttaaatactccacctgcatcacatctacaatcgg-atttttgtctg-tcctggt-gt 2050
Query: 820 ccctccagaatttcaacagaaagattagttatcagtgcccatggatcaggcaactattta 879
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 2049 ccctccagattttcaacagaaagattagttatcagtg-ccatggatcaggcaactatcta 1991
Query: 880 ccaaanaaac-aacggggaaaattggtccca 909
||||| |||| ||| ||||||||||||||||
Sbjct: 1990 ccaaagaaacaaacagggaaaattggtccca 1960
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5294
Number of Sequences: 1807
Number of extensions: 5294
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)