BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZC05FM1.SCF screened BAC_end
(902 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1568 946 0.0
>3x_Contig1568
Length = 12470
Score = 946 bits (477), Expect = 0.0
Identities = 569/590 (96%), Gaps = 8/590 (1%)
Strand = Plus / Plus
Query: 87 ctcagtatatatgagcaattacatatatgtacacacgatgataataagcgggcccctttt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5981 ctcagtatatatgagcaattacatatatgtacacacgatgataataagcgggcccctttt 6040
Query: 147 gctgatgagtagtttttgtttttatataacacttgttgctaaaatatagacgtttattct 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6041 gctgatgagtagtttttgtttttatataacacttgttgctaaaatatagacgtttattct 6100
Query: 207 ttttttatgggcgtctgcacttcaatggcatcaatactagcatacgttactagtaaccag 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6101 ttttttatgggcgtctgcacttcaatggcatcaatactagcatacgttactagtaaccag 6160
Query: 267 ctcggataccatcctaagcaaatgatgtaccatgtccaacaccccaactgttgcgaagct 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6161 ctcggataccatcctaagcaaatgatgtaccatgtccaacaccccaactgttgcgaagct 6220
Query: 327 tcaataagggcgtaaaaaaccttgaaaccagataatcttggttccacgaagttcaccact 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6221 tcaataagggcgtaaaaaaccttgaaaccagataatcttggttccacgaagttcaccact 6280
Query: 387 gcccaagttgcaatgaaaggattggatatttataagcaagac-aggttttntatcgacag 445
|||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||
Sbjct: 6281 gcccaagttgcaatgaaaggattggata-ttataagcaagacaaggttttttatcgacag 6339
Query: 446 ccttagattactctcgataattgtcgtagttcttgtcattgggaaatgc-agcaagccca 504
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 6340 ccttagattactctcgataattgtcgtagttcttgtcattggg-aatgcaagcaagccca 6398
Query: 505 tcacaatcgcaagtgagaaattcaatactaatagagaagtcaaaacaatggccatattan 564
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 6399 tcacaatcgcaagtgagaaattcaatactaatagagaagtcaaaacaatggccata-tag 6457
Query: 565 atgtatgcaaaagctttaaatctgtatgagaaaaggtcctgggatccttagnctagttct 624
|||||||| ||||||||||||||||||||| |||||| || |||| ||||| ||||||||
Sbjct: 6458 atgtatgcgaaagctttaaatctgtatgag-aaaggttcttggattcttagtctagttct 6516
Query: 625 cgaaaagcag-ggaagcacccaaaatttaccattggattccaaaaggact 673
|| ||||||| ||||||||| ||||| ||||| || | |||||||||||
Sbjct: 6517 cg-aaagcagcggaagcaccgaaaatataccactgagtcccaaaaggact 6565
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7007
Number of Sequences: 1807
Number of extensions: 7007
Number of successful extensions: 85
Number of sequences better than 1.0e-20: 1
length of query: 902
length of database: 10,358,551
effective HSP length: 16
effective length of query: 886
effective length of database: 10,329,639
effective search space: 9152060154
effective search space used: 9152060154
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)