BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZC05RM1.SCF screened BAC_end
(912 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1220 757 0.0
3x_Contig139 422 e-118
>3x_Contig1220
Length = 4729
Score = 757 bits (382), Expect = 0.0
Identities = 515/550 (93%), Gaps = 8/550 (1%)
Strand = Plus / Plus
Query: 286 aacctatagatacgctgtgcctagcacaaaatatgtgagtatctccaaaatgctaggcaa 345
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 14 aacctatagatacgctg-gcctagcacaaaatatgtgagtatccccaaaatgctaggcaa 72
Query: 346 atattgagcggtttttggaatctactttttcttttaatagagaaatcagtacccaaagtc 405
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 73 atattgagcggtttt-ggaatctacttttttttttaatagagaaatcagtacccaaagtc 131
Query: 406 atgtcaaaaaactgtgccttgcccacatttcttaaagacaggtagccatgaatcaagtgt 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 atgtcaaaaaactgtgccttgcccacatttcttaaagacaggtagccatgaatcaagtgt 191
Query: 466 ccattccctttcttgctcatatagaggaactatattgaaggcatgctaagacctaagaat 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ccattccctttcttgctcatatagaggaactatattgaaggcatgctaagacctaagaat 251
Query: 526 ccaccaccgtaaaaactccattctacatactanaatcaaaggaaattaaaaagacaaaaa 585
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 252 ccaccaccgtaaaaactccattctacatactaaaatcaaaggaaattaaaaagacaaaaa 311
Query: 586 aaaaaacaccgaagggaaaacagtgtatgatccttttggcaactccaagaacagctcaca 645
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 312 aaaaaacaccgaagggaaaacagtgtatgatcctttggcaaactccaagaacagctcaca 371
Query: 646 gcatgattttcccttattcctgc-anaaaagagagg-aaatgcgaagattcagtgggggc 703
|||||||||||||| |||||||| | |||||||||| |||||||||||| ||||||||||
Sbjct: 372 gcatgattttccctaattcctgcaaaaaaagagaggaaaatgcgaagatccagtgggggc 431
Query: 704 ccgtacaacggtgtacgagttatt-ctttgacggcgattagttaaat-ttagaaaattta 761
| |||||||||||||||||||| ||||||||||||||||| |||| ||||||| | ||
Sbjct: 432 cgtaacaacggtgtacgagttattcctttgacggcgattagtaaaatattagaaattcta 491
Query: 762 c-ccaaaacaggaatagnntggtttcttctttcggacaac-tttggtttcttggtgggtt 819
| | |||||| | |||| || |||||||| ||| | || |||| || |||||||||||
Sbjct: 492 cacaaaaacatggatagtttgttttcttctctcgagcgacgtttgtttccttggtgggtt 551
Query: 820 taaggaaaaa 829
||||||||||
Sbjct: 552 taaggaaaaa 561
>3x_Contig139
Length = 903
Score = 422 bits (213), Expect = e-118
Identities = 213/213 (100%)
Strand = Plus / Plus
Query: 48 cagaattaggaagaaggaagataggatgatgatataacaatttaaaggaaataatataac 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 cagaattaggaagaaggaagataggatgatgatataacaatttaaaggaaataatataac 184
Query: 108 acaaaaacccttcttttgaaagacttgaatgtttgtaatgtaggtaactacgcagaatga 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 acaaaaacccttcttttgaaagacttgaatgtttgtaatgtaggtaactacgcagaatga 244
Query: 168 atgaaaaacctaaccacgaaccgataaaggacgtaatgattaactggacccaaatcataa 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 atgaaaaacctaaccacgaaccgataaaggacgtaatgattaactggacccaaatcataa 304
Query: 228 aaagcatccacatatatatatatatatatatat 260
|||||||||||||||||||||||||||||||||
Sbjct: 305 aaagcatccacatatatatatatatatatatat 337
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 21,570
Number of Sequences: 1807
Number of extensions: 21570
Number of successful extensions: 3178
Number of sequences better than 1.0e-20: 2
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)