BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZC06FM1.SCF screened BAC_end
(878 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1780 722 0.0
>3x_Contig1780
Length = 27883
Score = 722 bits (364), Expect = 0.0
Identities = 464/485 (95%), Gaps = 10/485 (2%)
Strand = Plus / Plus
Query: 91 cggattatcgcctacggtggtgatcgaagagcacacccacacataccttcacacaaagca 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25119 cggattatcgcctacggtggtgatcgaagagcacacccacacataccttcacacaaagca 25178
Query: 151 aggcacttcgatcgtatcacaaattgagaataagaaaaaataaaaaaaaaaaagtcaact 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25179 aggcacttcgatcgtatcacaaattgagaataagaaaaaataaaaaaaaaaaagtcaact 25238
Query: 211 acaaccactctcgtctccagggcaaagcacaaaatcttcctgctacagtatgttagaagg 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25239 acaaccactctcgtctccagggcaaagcacaaaatcttcctgctacagtatgttagaagg 25298
Query: 271 caaaaaaatatgagatcagaacgaaaatagtaaaaaccgaaagagttaaaaagctgtaaa 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25299 caaaaaaatatgagatcagaacgaaaatagtaaaaaccgaaagagttaaaaagctgtaaa 25358
Query: 331 actagtaaaacaagcaaaactagctggaattctttcgatgtanggtttcaggtattacag 390
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 25359 actagtaaaacaagcaaaactagctggaattctttcgatgtagggtttcaggta-tacag 25417
Query: 391 a-tggatcgtactttgactgttctttctatttc-aactgagactaacgcatggggggttt 448
| ||||||||||||||||||||||||||||||| ||||||||||| ||||| || |||||
Sbjct: 25418 attggatcgtactttgactgttctttctatttcaaactgagactagcgcat-ggtggttt 25476
Query: 449 aattgnncttttactagttttcgggtttccgggggtgctgaaggttgctccttgtatgtg 508
| ||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 25477 atttgtctttttactagttttcgggttt-cggtggtgctgaaggttgctccttgtatgtg 25535
Query: 509 tgaaaaaga-aaacg-aaaccgaaatagg-cttgatattttatt-acaatcgaa-ttagg 563
||||||||| ||||| |||| || ||||| |||||||| ||||| ||||||||| |||||
Sbjct: 25536 tgaaaaagagaaacgaaaactgagataggtcttgatatcttattcacaatcgaatttagg 25595
Query: 564 gcaaa 568
|||||
Sbjct: 25596 gcaaa 25600
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 32,787
Number of Sequences: 1807
Number of extensions: 32787
Number of successful extensions: 1844
Number of sequences better than 1.0e-20: 1
length of query: 878
length of database: 10,358,551
effective HSP length: 16
effective length of query: 862
effective length of database: 10,329,639
effective search space: 8904148818
effective search space used: 8904148818
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)