BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZC06RM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1519 1197 0.0
>3x_Contig1519
Length = 9351
Score = 1197 bits (604), Expect = 0.0
Identities = 659/673 (97%), Gaps = 4/673 (0%)
Strand = Plus / Minus
Query: 48 tacgggatgatgatttccatgatgatgaaatacagctggaaacttaccatccgaatatgg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8706 tacgggatgatgatttccatgatgatgaaatacagctggaaacttaccatccgaatatgg 8647
Query: 108 taaaacccacatatgacaactataatgttccttctccatcacattctcccacaagagata 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8646 taaaacccacatatgacaactataatgttccttctccatcacattctcccacaagagata 8587
Query: 168 gatattatcacggtggtgcataccagaacgtccccacgtcaaatgagaatccgttctacc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8586 gatattatcacggtggtgcataccagaacgtccccacgtcaaatgagaatccgttctacc 8527
Query: 228 aaaacacagcatattatccggaagaaacaactaggcctcaagtttatccacggtatagct 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8526 aaaacacagcatattatccggaagaaacaactaggcctcaagtttatccacggtatagct 8467
Query: 288 agatgaatcaacttagttcaggaaacaaagtaacggtatcacaccagtgcgaaccgtcac 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8466 agatgaatcaacttagttcaggaaacaaagtaacggtatcacaccagtgcgaaccgtcac 8407
Query: 348 tttgtcactcggagtggtcgattcgaattttattttggttatgtacgtttttatatgtta 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8406 tttgtcactcggagtggtcgattcgaattttattttggttatgtacgtttttatatgtta 8347
Query: 408 cacttttcggtattttgtatgaatatagtctgtaaggcaagtttatttgacgttttcagc 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8346 cacttttcggtattttgtatgaatatagtctgtaaggcaagtttatttgacgttttcagc 8287
Query: 468 aatggtttctcttattg-acagatagatgcctgtaaattttcatgagcggattgattcaa 526
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8286 aatggtttctcttattgaacagatagatgcctgtaaattttcatgagcggattgattcaa 8227
Query: 527 tgaccttnaatgaatcttcaatcccttttcaataatatcgtcataaagggcagaggattg 586
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8226 tgaccttaattgaatcttcaatcccttttcaataatatcgtcataaagggcagaggattg 8167
Query: 587 ntctaccacatcnnttaggtaaaacgtctcttttgattgccgatagagcattgttccacg 646
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 8166 ttctaccacatc-tttaggtaaaacgtctcttttgattgcggatagagcattgttccacg 8108
Query: 647 tgtttgggtgttaattgactgtaaacagtggccttgcagaatccttggaagagtcaacct 706
||||| ||||||||||||||||||||||| |||| ||||||| |||||||||||||||
Sbjct: 8107 tgttt-ggtgttaattgactgtaaacagt-gcctgcaagaatccatggaagagtcaacct 8050
Query: 707 tactggcagattt 719
||||||||||||
Sbjct: 8049 aactggcagattt 8037
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6350
Number of Sequences: 1807
Number of extensions: 6350
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)