BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZC07FM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1142 946 0.0
>3x_Contig1142
Length = 5741
Score = 946 bits (477), Expect = 0.0
Identities = 524/535 (97%), Gaps = 4/535 (0%)
Strand = Plus / Minus
Query: 83 atgtttataagccggatcctttaatacctcatctataccttgtaagtatcctgtagagca 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1067 atgtttataagccggatcctttaatacctcatctataccttgtaagtatcctgtagagca 1008
Query: 143 atgtgcgaccaaaaacttgccagtatttgcaaggatttttttattctgatcttcttgtgc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1007 atgtgcgaccaaaaacttgccagtatttgcaaggatttttttattctgatcttcttgtgc 948
Query: 203 atattgcattaccttgtcatataaagtctttgcgtaaaaccctggtgaacaaattatgat 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 947 atattgcattaccttgtcatataaagtctttgcgtaaaaccctggtgaacaaattatgat 888
Query: 263 gcatttcagtgtgtcaaaatcgaaatgtctaaccatggacgcataagtggctctgtaaaa 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 887 gcatttcagtgtgtcaaaatcgaaatgtctaaccatggacgcataagtggctctgtaaaa 828
Query: 323 tttctctaccttgtcatcaaacttcattatatctgtacctctcttcttctttggaatgct 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 tttctctaccttgtcatcaaacttcattatatctgtacctctcttcttctttggaatgct 768
Query: 383 atattcgatcttatgctttaataccgtagagaatgaattgatcaagcaaatgtgggaaat 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 atattcgatcttatgctttaataccgtagagaatgaattgatcaagcaaatgtgggaaat 708
Query: 443 accttcttgtaagacaacagctgccatatcagaacgaccctcaatattacaagcttgttt 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 accttcttgtaagacaacagctgccatatcagaacgaccctcaatattacaagcttgttt 648
Query: 503 tacgagattatncacgtatgaattgnaatcatttttgatcaatgtggatggggtaagaaa 562
||||||||||| ||||||||||||| |||||| ||||||||||||| || |||||||| |
Sbjct: 647 tacgagattatccacgtatgaattgtaatcatctttgatcaatgtgaat-gggtaagaga 589
Query: 563 aatcgatggtgaaacttgaag-atttacccactggccaattcctgtttagcattc 616
||||||||||||||| ||||| ||||||||||||| ||| ||||| |||||||||
Sbjct: 588 aatcgatggtgaaac-tgaagaatttacccactgg-caaatcctggttagcattc 536
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,181
Number of Sequences: 1807
Number of extensions: 18181
Number of successful extensions: 219
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)