BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZC07RM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1708 1164 0.0
>3x_Contig1708
Length = 19451
Score = 1164 bits (587), Expect = 0.0
Identities = 648/666 (97%), Gaps = 2/666 (0%)
Strand = Plus / Plus
Query: 43 gctttgaatgttttcattgtttacgttttgttctacgatgtaaacacaaaaaaaca-gat 101
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 7540 gctttgaatgttttcattgtttacgttttgttctacgatgtaaacacaaaaaaacaagat 7599
Query: 102 tacccggatcatatttagtactacatttaattcaaatgaggtaagttggacatgtaatgg 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7600 tacccggatcatatttagtactacatttaattcaaatgaggtaagttggacatgtaatgg 7659
Query: 162 gcaatttgatgttatccaacccttcgttcattctaaatagcggtgttaatgcttagcgta 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7660 gcaatttgatgttatccaacccttcgttcattctaaatagcggtgttaatgcttagcgta 7719
Query: 222 gcttgtatagatcaatctcccctgatacaagtcggttttctcgagttttcttcctttatt 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7720 gcttgtatagatcaatctcccctgatacaagtcggttttctcgagttttcttcctttatt 7779
Query: 282 tcaatatcggaataatatgaaatcacgactttgaactaatctctacaatgtgaattcttt 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7780 tcaatatcggaataatatgaaatcacgactttgaactaatctctacaatgtgaattcttt 7839
Query: 342 caaagactagaagaaccaagaattatcagctaagatagacacttctcggagcgagttgga 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7840 caaagactagaagaaccaagaattatcagctaagatagacacttctcggagcgagttgga 7899
Query: 402 tgatatattctagctgaagagtaagaggtttgggtcacctgaaaaaaagttgtcagtatg 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7900 tgatatattctagctgaagagtaagaggtttgggtcacctgaaaaaaagttgtcagtatg 7959
Query: 462 gcatttgaaaccgagatcgagactaagagaagagaattgaattatttgaagcatgtttct 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7960 gcatttgaaaccgagatcgagactaagagaagagaattgaattatttgaagcatgtttct 8019
Query: 522 gcattgacacagaaattaaaggctcaattggacgagctgagcgttcangtagcgcagatg 581
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 8020 gcattgacacagaaattaaaggctcaattggacgagctgagcgttcaggtagcgcagatg 8079
Query: 582 aatagcaatgctgtgacttgttaagacgtaatggctaattgggactcggttctttggtct 641
|||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||
Sbjct: 8080 aatagcaatgctgtgactgttaaagacgtaatggctaattgggactcggttcttcggtct 8139
Query: 642 atctcttcagcttcgatattcttactttcatatacag-aaaccactttgagacttggaaa 700
|||||| |||||||||| |||||| ||||||| |||| ||| ||||||| |||||
Sbjct: 8140 atctctcaggcttcgatatctttacttcagtatacagaaaacgactatgagactgggaaa 8199
Query: 701 tgggcc 706
||||||
Sbjct: 8200 tgggcc 8205
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7533
Number of Sequences: 1807
Number of extensions: 7533
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)