BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC44ZC08FM1.SCF screened BAC_end
         (910 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1541                                                         882   0.0  

>3x_Contig1541 
          Length = 10565

 Score =  882 bits (445), Expect = 0.0
 Identities = 516/532 (96%), Gaps = 6/532 (1%)
 Strand = Plus / Plus

                                                                        
Query: 86   agccatttccatattaagccagtcgttactcctataaaacacatcttcgatttccttatg 145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7215 agccatttccatattaagccagtcgttactcctataaaacacatcttcgatttccttatg 7274

                                                                        
Query: 146  ccctttcagcatgacatcattgaactcattgagtgattccacaatagatcgcgaaccacc 205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7275 ccctttcagcatgacatcattgaactcattgagtgattccacaatagatcgcgaaccacc 7334

                                                                        
Query: 206  cgtttggttcttgagcttctttttggcagcctttaaagcccaatccatcgtttaaattca 265
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7335 cgtttggttcttgagcttctttttggcagcctttaaagcccaatccatcgtttaaattca 7394

                                                                        
Query: 266  aagccaccacgggagctatccatgtaaagctgtgaatttctgagctgggtagaaattggt 325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7395 aagccaccacgggagctatccatgtaaagctgtgaatttctgagctgggtagaaattggt 7454

                                                                        
Query: 326  cgagtctttacccacaaatatagaagtactggggataaaagcgtctaaacttttttgtta 385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7455 cgagtctttacccacaaatatagaagtactggggataaaagcgtctaaacttttttgtta 7514

                                                                        
Query: 386  ttattttgggttntgattcattatataaaacgacttcaattatacaaacccaaacaacgc 445
            ||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 7515 ttatttt-ggttttgattcattatataaaacgacttcaattatacaaaccaaaacaacgc 7573

                                                                        
Query: 446  aagttttgtcagagtacatgttgctgtgcttgataccgattgacctacaccgatattttg 505
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7574 aagttttgtcagagtacatgttgctgtgcttgataccgattgacctacaccgatattttg 7633

                                                                        
Query: 506  gttccgttactaatc-aacatgtagatcaacc-gttaggat-aaggaagtttgatactat 562
            |||| || ||||||| ||||||  |||||||| |||||||| ||| ||||||||||||||
Sbjct: 7634 gttcggtaactaatcaaacatgaggatcaaccagttaggataaagaaagtttgatactat 7693

                                                                
Query: 563  ccacgtg-attttacgtggatcattcggaaagagattaaa-ctattttgaca 612
            ||||||| || | ||||||||||| ||||||||||||||| |||||||||||
Sbjct: 7694 ccacgtgaatatcacgtggatcatacggaaagagattaaacctattttgaca 7745


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8056
Number of Sequences: 1807
Number of extensions: 8056
Number of successful extensions: 75
Number of sequences better than 1.0e-20: 1
length of query: 910
length of database: 10,358,551
effective HSP length: 16
effective length of query: 894
effective length of database: 10,329,639
effective search space: 9234697266
effective search space used: 9234697266
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)