BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZC08RM1.SCF screened BAC_end
(861 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig675 1049 0.0
>3x_Contig675
Length = 2979
Score = 1049 bits (529), Expect = 0.0
Identities = 683/714 (95%), Gaps = 19/714 (2%)
Strand = Plus / Minus
Query: 50 acaatgtattaaggttagcctttgtagtatttcgggcttcagcaaacgcttttttcatca 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1666 acaatgtattaaggttagcctttgtagtatttcgggcttcagcaaacgcttttttcatca 1607
Query: 110 gaaatgaatcaggatccatcatcataggtaaatgtttagccatgtagaaaatcacatcaa 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1606 gaaatgaatcaggatccatcatcataggtaaatgtttagccatgtagaaaatcacatcaa 1547
Query: 170 taccttttctttttcgaggaaaatgcagtcgtttctttttaatcaagatcagagttgttc 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1546 taccttttctttttcgaggaaaatgcagtcgtttctttttaatcaagatcagagttgttc 1487
Query: 230 cgggcggagaaacttgccaaggtgacgtacgtacctcaatatttctttcggagaaacaac 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1486 cgggcggagaaacttgccaaggtgacgtacgtacctcaatatttctttcggagaaacaac 1427
Query: 290 aagatcagaatgatcacgtgaccaattgaccaaaagatgtggctcattcataggaataaa 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1426 aagatcagaatgatcacgtgaccaattgaccaaaagatgtggctcattcataggaataaa 1367
Query: 350 aaccgtacgctctacactgtacactaccacgcgtcttcgctcactccatggtatacaagg 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1366 aaccgtacgctctacactgtacactaccacgcgtcttcgctcactccatggtatacaagg 1307
Query: 410 gtgttgctgtcataccgtctcggctgttatgcgaaggtaacgaaatattttttttttttc 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1306 gtgttgctgtcataccgtctcggctgttatgcgaaggtaacgaaatattttttttttttc 1247
Query: 470 tttcgaaaaaaacgtcgactcaagccatcatcacaaactcgtcccagaagcaacgtacga 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1246 tttcgaaaaaaacgtcgactcaagccatcatcacaaactcgtcccagaagcaacgtacga 1187
Query: 530 ctcgcatatttgctgaatcttgc-aatcgcataccgt-atatcattag-attagccccaa 586
|||||||||||||||||||| || ||||||||||||| |||||||||| |||||||||||
Sbjct: 1186 ctcgcatatttgctgaatctggcaaatcgcataccgtaatatcattagaattagccccaa 1127
Query: 587 ggcaattcttaa-cactccagg--aaaaaaaaagat-gaaacgaactttc-cacccgg-- 639
|||||||||||| ||||| ||| |||||||||||| ||||||||| ||| ||| | |
Sbjct: 1126 ggcaattcttaagcactcgagggaaaaaaaaaagatagaaacgaacattcacacacagaa 1067
Query: 640 accttcagctgagag-aagaaagg-aacagtgg--aaaaagaaaaagc-atgattga-tt 693
|| | |||||||||| |||||||| |||||| | ||||||||||||| ||||| | |
Sbjct: 1066 acttacagctgagagaaagaaaggaaacagtagaaaaaaagaaaaagcaatgatgaagta 1007
Query: 694 agcctgatt-acatggtggtgcgaagcgccaa-gctttggatactttacctgcc 745
||||||||| ||||||||||||| |||||||| |||||| ||||||||||||||
Sbjct: 1006 agcctgattaacatggtggtgcg-agcgccaatgctttgcatactttacctgcc 954
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 19,555
Number of Sequences: 1807
Number of extensions: 19555
Number of successful extensions: 196
Number of sequences better than 1.0e-20: 1
length of query: 861
length of database: 10,358,551
effective HSP length: 16
effective length of query: 845
effective length of database: 10,329,639
effective search space: 8728544955
effective search space used: 8728544955
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)