BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZC09FM1.SCF screened BAC_end
(912 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1746 1061 0.0
>3x_Contig1746
Length = 26672
Score = 1061 bits (535), Expect = 0.0
Identities = 639/669 (95%), Gaps = 4/669 (0%)
Strand = Plus / Minus
Query: 87 tcaagtcactgatacttgccatttggctgtgatgtcggctttgcctatcgagaaaacaga 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13290 tcaagtcactgatacttgccatttggctgtgatgtcggctttgcctatcgagaaaacaga 13231
Query: 147 aggacacatccatgcggagttcacttaccatgccctacgtcaaggttccaagtttcaagg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13230 aggacacatccatgcggagttcacttaccatgccctacgtcaaggttccaagtttcaagg 13171
Query: 207 ttatgacccaatttgttgtagtggacctagttgttcaactttacactatgtggataatga 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13170 ttatgacccaatttgttgtagtggacctagttgttcaactttacactatgtggataatga 13111
Query: 267 cgctgatatggcaggcaaacactccgtgttgatcgatgcgggtgctgaatgggaatgtta 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13110 cgctgatatggcaggcaaacactccgtgttgatcgatgcgggtgctgaatgggaatgtta 13051
Query: 327 caccgcagatgttaccagatgtttcccaattagtggtaaatggaccaaagaacaccgtga 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13050 caccgcagatgttaccagatgtttcccaattagtggtaaatggaccaaagaacaccgtga 12991
Query: 387 tatctatgatgcagtattggacatgcatcagaatgccatgtcacaaatcaaagatggtgc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12990 tatctatgatgcagtattggacatgcatcagaatgccatgtcacaaatcaaagatggtgc 12931
Query: 447 ctcctgngaggaaattcatctctctgctcataaagttctcatcaagcacttgttgaagct 506
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12930 ctcctgggaggaaattcatctctctgctcataaagttctcatcaagcacttgttgaagct 12871
Query: 507 gggtatctttaaatcggctttctcagctgatgatatctatgatagaaa-gccactgtggc 565
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 12870 gggtatctttaaatcggctttctcagctgatgatatctatgatagaaaggccactgtggc 12811
Query: 566 gttttttccccatggctttgggcatttgttagggattgatacccatgaacttgggggaag 625
|||||| ||||||||||| ||||||||||||||||| ||||||||||| |||| |||||
Sbjct: 12810 gtttttcccccatggcttggggcatttgttagggatggatacccatgacgttggtggaag 12751
Query: 626 aaccaactttgaagatgct-acccatatttgaaatttctaa-ataacctcgtccatttgc 683
| | |||| |||||||||| ||||||||||||||||||||| || || |||||||||
Sbjct: 12750 accaaactatgaagatgctaacccatatttgaaatttctaagattacgtcgtccattgca 12691
Query: 684 agaaggattggtnatccctaatgaacctcgggtgttattttaattcatttcttattgaag 743
|||||| |||| || ||||||||||| || |||||||| ||| |||| || |||||||
Sbjct: 12690 agaaggtatggtagtcactaatgaacct-ggttgttatttcaatccattcctaattgaag 12632
Query: 744 aacttttgg 752
|||| ||||
Sbjct: 12631 aactcttgg 12623
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,004
Number of Sequences: 1807
Number of extensions: 13004
Number of successful extensions: 88
Number of sequences better than 1.0e-20: 1
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)