BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZC09RM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1789 1201 0.0
>3x_Contig1789
Length = 30977
Score = 1201 bits (606), Expect = 0.0
Identities = 623/626 (99%), Gaps = 2/626 (0%)
Strand = Plus / Minus
Query: 48 atgcctctgtaaatgctcataccgtgagaaggtcttctcacaatctggatgaggacaaac 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19818 atgcctctgtaaatgctcataccgtgagaaggtcttctcacaatctggatgaggacaaac 19759
Query: 108 gtatctgccgcctactttttcctccgacgcttccttactctcagaacccatcattttcta 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19758 gtatctgccgcctactttttcctccgacgcttccttactctcagaacccatcattttcta 19699
Query: 168 ccaccgtctgctgtacagcgtaaatatatcaatagatactgaagtacactgcttactccg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19698 ccaccgtctgctgtacagcgtaaatatatcaatagatactgaagtacactgcttactccg 19639
Query: 228 aggctccgacagctgatgatttaaggataacgaacagtatatttatgatgtcttgtgatt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19638 aggctccgacagctgatgatttaaggataacgaacagtatatttatgatgtcttgtgatt 19579
Query: 288 gttatgctatgatgagtacggtcgaatcgaaactgtttttcagatgttgatcgcttataa 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19578 gttatgctatgatgagtacggtcgaatcgaaactgtttttcagatgttgatcgcttataa 19519
Query: 348 tcacggcccggaaataatatttctggggtccccgaaaaaagggttttgggggatatatat 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19518 tcacggcccggaaataatatttctggggtccccgaaaaaagggttttgggggatatatat 19459
Query: 408 atatataacggtgtatgtggtggggtctggagatgtggtagagatatattacatgcttag 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19458 atatataacggtgtatgtggtggggtctggagatgtggtagagatatattacatgcttag 19399
Query: 468 tgcgaccccctcgtattgggaggacgtgtttatgtagggatctactgggaagtttttcct 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19398 tgcgaccccctcgtattgggaggacgtgtttatgtagggatctactgggaagtttttcct 19339
Query: 528 cgcgatgtttatggcgatccattcgagtaaaatgtcgcactgtttcactaggatcttggc 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19338 cgcgatgtttatggcgatccattcgagtaaaatgtcgcactgtttcactaggatcttggc 19279
Query: 588 agtttggtcatcgaccttgcttgattccatcatttcggggagtaaagtgactatgtc-ta 646
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 19278 agtttggtcatcgacgttgcttgattccatcatttcggggagtaaagtgacta-gtctta 19220
Query: 647 gtagatggataattccgtaaatttca 672
||||||||||||||||||||||||||
Sbjct: 19219 gtagatggataattccgtaaatttca 19194
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9757
Number of Sequences: 1807
Number of extensions: 9757
Number of successful extensions: 1011
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)