BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC44ZC10FM1.SCF screened BAC_end (878 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig839 565 e-161 >3x_Contig839 Length = 3352 Score = 565 bits (285), Expect = e-161 Identities = 377/400 (94%), Gaps = 6/400 (1%) Strand = Plus / Plus Query: 261 caattggttccactgctgaccctgagactcgatcctttatgctccattggaaatcgaaaa 320 |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 5 caattggttc-actgctgaccctgagactcgatccttagtgctccattggaaatcgaaaa 63 Query: 321 ccccttgcgcttcttcactgggtttgatctggatctccccctttatttgctttcggcgta 380 |||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||| Sbjct: 64 acccttgcgcttcttcactgggtttgatctggatctcccccttcatctgctt-cggcgta 122 Query: 381 caaattttactctcctcatcataatcacattttcctgccctaanactgatcgcctctgtc 440 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 123 caaattttactctcctcatcataatcacattttcctgccctaaaactgatcgcctctgtc 182 Query: 441 atatcaatattcttctctcctctttttaacctataccactggtctgacaatctctcagat 500 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 183 atatcaatattcttctctcctcttttaaacctataccactggtctgacaatctctcagat 242 Query: 501 gttctatgattgatatcttcgtgtgtgtaggtcctatttaaacag-ttgccactgctgac 559 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 243 gttctatgattgatatcttcgtgtgtgtaggtcctatttaaacagtttgccactgctgac 302 Query: 560 gccatttg-tcatattttcctaaaaaaaat-atgttggaggcttaatcttgtgaccaaaa 617 |||||||| |||||||||||| |||| ||| |||||| |||||||||| ||||||||| | Sbjct: 303 gccatttgttcatattttccttaaaagaataatgttgtaggcttaatcatgtgaccaaga 362 Query: 618 tatgggagaatttttttat-aaaaattttttataaaaccg 656 ||||| || |||||| ||| |||||||| |||| |||||| Sbjct: 363 tatggtagtatttttctatgaaaaatttcttatgaaaccg 402 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7348 Number of Sequences: 1807 Number of extensions: 7348 Number of successful extensions: 51 Number of sequences better than 1.0e-20: 1 length of query: 878 length of database: 10,358,551 effective HSP length: 16 effective length of query: 862 effective length of database: 10,329,639 effective search space: 8904148818 effective search space used: 8904148818 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)