BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZC10RM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1655 1560 0.0
>3x_Contig1655
Length = 16228
Score = 1560 bits (787), Expect = 0.0
Identities = 859/874 (98%), Gaps = 7/874 (0%)
Strand = Plus / Plus
Query: 46 aaagaaaatgtaccacgtatagataaactgatgaagacagaagaccgcatatcaagcgta 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 aaagaaaatgtaccacgtatagataaactgatgaagacagaagaccgcatatcaagcgta 664
Query: 106 gagtggatgaactctttcaaatgccaccacggttacgaaataaagctcacggcagtagaa 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 gagtggatgaactctttcaaatgccaccacggttacgaaataaagctcacggcagtagaa 724
Query: 166 gttctgcaaaccatgacttcgaagaagaagacggacgaagaattatcagcgttacttaac 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 gttctgcaaaccatgacttcgaagaagaagacggacgaagaattatcagcgttacttaac 784
Query: 226 gaagtaccacaaaaattcatcaagttctatgaaaatgtaaggcctccgtatgtggggacg 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 gaagtaccacaaaaattcatcaagttctatgaaaatgtaaggcctccgtatgtggggacg 844
Query: 286 tattccaagaaattgacattaccaaacaataatcctttcagtactgagggaacaggattc 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 tattccaagaaattgacattaccaaacaataatcctttcagtactgagggaacaggattc 904
Query: 346 gattatggatatgattctgatctcgattgggttaatgaagaggaagaagaaggcggtgtc 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905 gattatggatatgattctgatctcgattgggttaatgaagaggaagaagaaggcggtgtc 964
Query: 406 gacgatttagaaaatgatgaagatgaagaggatgaggatcaagaggatgaagagggaggc 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 965 gacgatttagaaaatgatgaagatgaagaggatgaggatcaagaggatgaagagggaggc 1024
Query: 466 gacaatgaaatggatggcttcctagataaagatgaaaatgaaaatatggcacgtaagaag 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1025 gacaatgaaatggatggcttcctagataaagatgaaaatgaaaatatggcacgtaagaag 1084
Query: 526 tttgtcggtcccttgataccgacaataaaactgcgaaaggatacggataaactcgatgac 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1085 tttgtcggtcccttgataccgacaataaaactgcgaaaggatacggataaactcgatgac 1144
Query: 586 gagtctaaacagtattttgcattggtctccgtagaatgtatgttccaagatcaatgtttc 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1145 gagtctaaacagtattttgcattggtctccgtagaatgtatgttccaagatcaatgtttc 1204
Query: 646 cccgtagatccatataaggctcccaacaagagacctgctgtggaggacggttcatttgaa 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1205 cccgtagatccatataaggctcccaacaagagacctgctgtggaggacggttcatttgaa 1264
Query: 706 acaacttcttcgaanaacccagc-actaagaaatccaaaagtctaatcacagaaccttaa 764
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 1265 acaacttcttcgaaaaacccagcaactaagaaatccaaaagtctaatcacagaacctaaa 1324
Query: 765 catctttttgcagttgctgggaacaagtgcatgactgtacattttcgttgagacacgttt 824
|||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 1325 catc-ttttgcagttgct-ggaacaagtgcatgactgtacattttcgttgag-caccgtt 1381
Query: 825 gttgaga-tattcaaaagcatttacc-cagtttaagaa-gatacgataaagaactctgtt 881
||||||| ||| ||||||||| |||| |||| |||||| |||||||||||||||||||||
Sbjct: 1382 gttgagattatccaaaagcatctaccacagtataagaaggatacgataaagaactctgtt 1441
Query: 882 aaagaatatgctgcaaaatctaccaaggaagacc 915
|||||||||||||||||||||||||||| |||||
Sbjct: 1442 aaagaatatgctgcaaaatctaccaagggagacc 1475
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8647
Number of Sequences: 1807
Number of extensions: 8647
Number of successful extensions: 140
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)