BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZC11FM1.SCF screened BAC_end
(988 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1709 613 e-175
>3x_Contig1709
Length = 16948
Score = 613 bits (309), Expect = e-175
Identities = 358/368 (97%), Gaps = 5/368 (1%)
Strand = Plus / Minus
Query: 87 cagcagccaagaatttccagttggactcagggtcattaggatcgacaaagcctgttggat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8820 cagcagccaagaatttccagttggactcagggtcattaggatcgacaaagcctgttggat 8761
Query: 147 gaacctgaatttggtccatatcaattaatttagcacctagcctttctagtaaaacctgcc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8760 gaacctgaatttggtccatatcaattaatttagcacctagcctttctagtaaaacctgcc 8701
Query: 207 cttcacccattttttgatcaccgtttgtggttggtaaatcgactagatgtggggcatatt 266
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8700 cttcacccaaagtctgatcaccgtttgtggttggtaaatcgactagatgtggggcatatt 8641
Query: 267 tttccaacaacttcttgttgaaaccaaatccacctgtacagaacacgacattgtttgttt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8640 tttccaacaacttcttgttgaaaccaaatccacctgtacagaacacgacattgtttgttt 8581
Query: 327 caatggaatgtgntccttctgaatcctcgtagactacaccatttaccttattattctcat 386
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8580 caatggaatgtgttccttctgaatcctcgtagactacaccatttaccttattattctcat 8521
Query: 387 caagtttgacatcaatttaccttgcttattcaattggatctttgacgaagatctgcggcc 446
||||||||||||||| ||||||||| |||||||||||||| |||||| |||||||| |||
Sbjct: 8520 caagtttgacatcaa-ttaccttgc-tattcaattggatc-ttgacg-agatctgc-gcc 8466
Query: 447 atacgatt 454
||||||||
Sbjct: 8465 atacgatt 8458
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9818
Number of Sequences: 1807
Number of extensions: 9818
Number of successful extensions: 92
Number of sequences better than 1.0e-20: 1
length of query: 988
length of database: 10,358,551
effective HSP length: 16
effective length of query: 972
effective length of database: 10,329,639
effective search space: 10040409108
effective search space used: 10040409108
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)