BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZC11RM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1400 1114 0.0
>3x_Contig1400
Length = 8536
Score = 1114 bits (562), Expect = 0.0
Identities = 662/686 (96%), Gaps = 8/686 (1%)
Strand = Plus / Minus
Query: 232 cctcaattgatcattgctactcatatctcgtttgcactattgctttgcgtgttgggatcg 291
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 8536 cctcaattgatcattgctactcatatctcgtttgcactaatgctttgcgtgttgggatcg 8477
Query: 292 cagatctatttaaccaaaaatatccatttcatcgcattaacgattatcgccactctacta 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8476 cagatctatttaaccaaaaatatccatttcatcgcattaacgattatcgccactctacta 8417
Query: 352 tggatcaccgtgacgtggttcatctacgaattacaaaacacaaagcttgttaccaacgaa 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8416 tggatcaccgtgacgtggttcatctacgaattacaaaacacaaagcttgttaccaacgaa 8357
Query: 412 gatctacaaacagctgaatctaaaaagactgataagactgagccttccaagccctctgaa 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8356 gatctacaaacagctgaatctaaaaagactgataagactgagccttccaagccctctgaa 8297
Query: 472 gagataaatctagagggtgttgcgaaacctgatcctaaaccatcatctacacctaaaaaa 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8296 gagataaatctagagggtgttgcgaaacctgatcctaaaccatcatctacacctaaaaaa 8237
Query: 532 aggaaaacaaaatcaagaagagcttaagctggtgataaaccattctctcacctgagcaac 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8236 aggaaaacaaaatcaagaagagcttaagctggtgataaaccattctctcacctgagcaac 8177
Query: 592 tttctgattagactacattggacagtaagtaaaatcatttttaaacgcaataaccactgc 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8176 tttctgattagactacattggacagtaagtaaaatcatttttaaacgcaataaccactgc 8117
Query: 652 atagacttgtaacatttgggaacccatat-aaatttaatttcaatac-aaggttgcagaa 709
|||||||||||||||||||||| |||||| |||||||||| ||||| ||||||||||||
Sbjct: 8116 atagacttgtaacatttgggaa-ccatataaaatttaattcaaatacaaaggttgcagaa 8058
Query: 710 gccattatttcgtcagattactacgatctattat-tacaacgttgtgtaaa-gcacattc 767
|||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
Sbjct: 8057 gccattatttcgtcagattactacgatctattatatacaacgttgtgtaaaggcacatcc 7998
Query: 768 ctaatagctgcctttcgtttcccttttcactcttcgntnattgtttcatgcattatccat 827
|||||||||||| ||||||| ||||||||||||| | |||||||||||||| ||||||
Sbjct: 7997 taaatagctgccttccgtttcctttttcactcttcg-ttattgtttcatgcataatccat 7939
Query: 828 acattttattgttcgctcggaacttctatggcattcanaattcgntttgag-aaaaaaaa 886
|||||| | |||||||||||||||||||||||||||| | |||| |||||| ||||||||
Sbjct: 7938 acatttca-tgttcgctcggaacttctatggcattcagatttcgttttgagaaaaaaaaa 7880
Query: 887 aaaatatgaacggnaagttaatgaat 912
||||||||||||| |||| |||||||
Sbjct: 7879 aaaatatgaacggaaagtaaatgaat 7854
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,832
Number of Sequences: 1807
Number of extensions: 12832
Number of successful extensions: 86
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)