BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC44ZC12FM1.SCF screened BAC_end (963 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig288 498 e-140 >3x_Contig288 Length = 1699 Score = 498 bits (251), Expect = e-140 Identities = 280/286 (97%), Gaps = 3/286 (1%) Strand = Plus / Plus Query: 87 cggatgaacctgagacaacgtctttccaaatagtgtagccatgttgcctattggtgcgct 146 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1413 cggatgaacctgagacaacgtctttccaaatagtgtagccatgttgcctattggtgcgct 1472 Query: 147 ttcagagaccactatttcgatagctttcgcctgtttttctgcatctcttcacaaagagca 206 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1473 ttcagagaccactatttcgatagctttcgcctgtttttctgcatctcttcacaaagagca 1532 Query: 207 caagatgtcaaagtcgaatatagaataagaatcgaataaatgctaattataataatacat 266 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1533 caagatgtcaaagtcgaatatagaataagaatcgaataaatgctaattataataatacat 1592 Query: 267 tacatgatagaantgaaaatatttacatatgaggatatatatatat-tatacgaagcggc 325 |||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||| Sbjct: 1593 tacatgatagaattgaaaatatttacatatgaggatatatatatatatatacg-agcggc 1651 Query: 326 a-gagtgaaagaatgtgaagaccatgaatgggtcataccaaccttc 370 | ||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 1652 aggagtgaagaaatgtgaagaccatgaatgggtcataccaaccttc 1697 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 19,125 Number of Sequences: 1807 Number of extensions: 19125 Number of successful extensions: 392 Number of sequences better than 1.0e-20: 1 length of query: 963 length of database: 10,358,551 effective HSP length: 16 effective length of query: 947 effective length of database: 10,329,639 effective search space: 9782168133 effective search space used: 9782168133 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)