BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZC12RM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1760 1507 0.0
>3x_Contig1760
Length = 27266
Score = 1507 bits (760), Expect = 0.0
Identities = 841/863 (97%), Gaps = 6/863 (0%)
Strand = Plus / Minus
Query: 44 ctttagatatacatttatctacaccaatttcaaatggagatatcttgatatttatgactg 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23548 ctttagatatacatttatctacaccaatttcaaatggagatatcttgatatttatgactg 23489
Query: 104 gtcaagaagatattgaagcaacttgttctaccatcatcgaacgcttaactgagatctata 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23488 gtcaagaagatattgaagcaacttgttctaccatcatcgaacgcttaactgagatctata 23429
Query: 164 ctaaaaaatacggggcaaattatgaggagcaattagcggatgttcaagttctttttattt 223
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 23428 ctaaaaaatacggggcaaattatgaggagcaattagcggatgttcaagttcttccaattt 23369
Query: 224 actcgtcgttacctgcagatgtacaaggaaggatatttcaaagacaagaacaaaacgtta 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23368 actcgtcgttacctgcagatgtacaaggaaggatatttcaaagacaagaacaaaacgtta 23309
Query: 284 gaaagattgttgttgccacaaatattgctgaaacatcattgacagttgacggtattaaat 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23308 gaaagattgttgttgccacaaatattgctgaaacatcattgacagttgacggtattaaat 23249
Query: 344 atgtcatagattgtgggtactccaaattgaaggtgtataatccgaaaatcggccttgata 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23248 atgtcatagattgtgggtactccaaattgaaggtgtataatccgaaaatcggccttgata 23189
Query: 404 gtttgcgaatcacacccatctcacttgcaaatgctaatcaacggtcaggaagggctggtc 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23188 gtttgcgaatcacacccatctcacttgcaaatgctaatcaacggtcaggaagggctggtc 23129
Query: 464 gtacgggccctggtatcgcatatagacttttcactcatgattcagcgatggaagatatgt 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23128 gtacgggccctggtatcgcatatagacttttcactcatgattcagcgatggaagatatgt 23069
Query: 524 atcctcaggccatcccagaaattcaaaggacaaatttggcaaatacactcttgcagttga 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23068 atcctcaggccatcccagaaattcaaaggacaaatttggcaaatacactcttgcagttga 23009
Query: 584 aatcgttgaatatcaacaacttatcgaaattccctttcattgatccaccgccatcgcaga 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23008 aatcgttgaatatcaacaacttatcgaaattccctttcattgatccaccgccatcgcaga 22949
Query: 644 atctaatgacatcgttgtacgatctttgggccttagaagctttggacaactttcgtcatc 703
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 22948 atctaatgacatcgttgtacgatctttgggccttagaagctttggacaacttcggtcatc 22889
Query: 704 taactaaattaggcagactgatgggtgcctttccttttacag-cctttcttttcagggta 762
||||||||||||||||||||||||||||| |||| ||||||| ||||||||| |||||||
Sbjct: 22888 taactaaattaggcagactgatgggtgcc-ttccctttacagccctttctttccagggta 22830
Query: 763 ctaataagtgcatcacaatatggctgtaccgaagaagagttaacgattgtatctatgctt 822
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 22829 ctaataagtgcatcacaatatggctgtaccgaagagatgttaacgattgtatctatgc-t 22771
Query: 823 ttcggttccgtctgtctttctatagnccgaaggaacgtgaanaaaaatttgaccaagcca 882
|||||||||||||||| |||||||| ||||||||||||||| || ||| |||||||||||
Sbjct: 22770 ttcggttccgtctgtc-ttctataggccgaaggaacgtgaagaagaatctgaccaagcca 22712
Query: 883 gaaannccggtttttcatncctg 905
||| |||||||||||| ||||
Sbjct: 22711 gaa--gccggtttttcatccctg 22691
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6772
Number of Sequences: 1807
Number of extensions: 6772
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)