BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZD02FM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1676 912 0.0
>3x_Contig1676
Length = 15800
Score = 912 bits (460), Expect = 0.0
Identities = 621/658 (94%), Gaps = 13/658 (1%)
Strand = Plus / Plus
Query: 87 cttatttcttcaacacaattgataaaactgatc-ataattacctccatattcgtgacatt 145
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 5473 cttatttcttcaacacaattgataaaactgatccataattacctccatattcgtgacatt 5532
Query: 146 gttgtttatatctccaatgagagacactttgcagaagaactgtttggcaatcttgattta 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5533 gttgtttatatctccaatgagagacactttgcagaagaactgtttggcaatcttgattta 5592
Query: 206 cgcatctttactttgggcaacagaaactatacctttattcgttacatcactcttagttcc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5593 cgcatctttactttgggcaacagaaactatacctttattcgttacatcactcttagttcc 5652
Query: 266 tttattaattgttgttttcccagttttaaaggatacaacggatggacacatactaaaccc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5653 tttattaattgttgttttcccagttttaaaggatacaacggatggacacatactaaaccc 5712
Query: 326 aacagaatcttcccagtatattttgtccacaatgtggtctagtgtgattatgttattact 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5713 aacagaatcttcccagtatattttgtccacaatgtggtctagtgtgattatgttattact 5772
Query: 386 aggtgggtttaccttggcagcagcactatctaaatataacattgctaaagttctatcaac 445
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 5773 aggtggttttaccttggcagcagcactatctaaatataacattgctaaggttctatcaac 5832
Query: 446 tcacattttgtcgtctgncgggacaaaccc-aagattattc-tttgacaaatatgggtgt 503
||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||
Sbjct: 5833 tcacattttgtcgtctgcggggacaaacccaaagattattcttttgacaaatatgggtgt 5892
Query: 504 -gctttgtttgcatc-atgtgggtat-caatgtagccgcgcccgtattgng-tattccat 559
|||||||||||||| |||||||||| ||||||||||||||| |||||| | ||||||||
Sbjct: 5893 ggctttgtttgcatcaatgtgggtatccaatgtagccgcgccggtattgtgttattccat 5952
Query: 560 tattcacccattattaag-actttgcctaaaggc-gtacttttgcaaaaatca-tgattt 616
|||||| ||||||||||| ||||||||||||||| |||| ||||| ||||||| ||||||
Sbjct: 5953 tattcagccattattaagaactttgcctaaaggcagtacatttgc-aaaatcattgattt 6011
Query: 617 tagggattgcattggcatcc-attttgggagtatggcatcccctattgcttccccttaaa 675
|||| ||||||||||||||| || |||| |||||||||||||||||||||||||| |||
Sbjct: 6012 taggtattgcattggcatccaatattggaggtatggcatcccctattgcttcccctcaaa 6071
Query: 676 actttttttccataggttttaatggatccccccctttcttgggcccaatggtttattg 733
|| | |||| ||||| | | |||||||| || | ||| |||| ||||||||||||||
Sbjct: 6072 acatcatttcgatagg-tatgatggatccgccaccttcatggggccaatggtttattg 6128
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6880
Number of Sequences: 1807
Number of extensions: 6880
Number of successful extensions: 70
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)