BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZD02RM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1630 1600 0.0
>3x_Contig1630
Length = 14771
Score = 1600 bits (807), Expect = 0.0
Identities = 886/903 (98%), Gaps = 9/903 (0%)
Strand = Plus / Plus
Query: 47 ttctctgagcagaattaggtttctttggcttcaataccatcactcttagcacaactcctt 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5372 ttctctgagcagaattaggtttctttggcttcaataccatcactcttagcacaactcctt 5431
Query: 107 tacgaatcgggcatacctccaaatctggggattcagtgatcttcttacggccaggaggct 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5432 tacgaatcgggcatacctccaaatctggggattcagtgatcttcttacggccaggaggct 5491
Query: 167 tgacccctctctttatttggttcaacgtggcttgtattggtgaagtatatgagaaagaac 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5492 tgacccctctctttatttggttcaacgtggcttgtattggtgaagtatatgagaaagaac 5551
Query: 227 gttgttgcagtggtggtgcaaatgctatgcttgaacgaacattacgcaacgatagtctag 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5552 gttgttgcagtggtggtgcaaatgctatgcttgaacgaacattacgcaacgatagtctag 5611
Query: 287 tcagactactgctcaatccgaaaacctgtttgaacattggtatctttgacaggattgttt 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5612 tcagactactgctcaatccgaaaacctgtttgaacattggtatctttgacaggattgttt 5671
Query: 347 cttaagatccagtgcacgtaagtcaaactcagagttgaacttacgccaacatttattcac 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5672 cttaagatccagtgcacgtaagtcaaactcagagttgaacttacgccaacatttattcac 5731
Query: 407 tgaccgattgatataactctttcaattcaacatttgcttcataattttttgtcagtttct 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5732 tgaccgattgatataactctttcaattcaacatttgcttcataattttttgtcagtttct 5791
Query: 467 gatgatgaaaaatcatagttgaaaatattcggaagtcatgtgatcgaatatgtgttgttg 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5792 gatgatgaaaaatcatagttgaaaatattcggaagtcatgtgatcgaatatgtgttgttg 5851
Query: 527 ctgatgtccgggaaattgttcagaaaatgtgcatggtttgagagatcttttaacctanaa 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 5852 ctgatgtccgggaaattgttcagaaaatgtgcatggtttgagagatcttttaacctaaaa 5911
Query: 587 gattttgttcatttcgttgggaacaccagctgcactatgcgggttccgaattacgagaaa 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5912 gattttgttcatttcgttgggaacaccagctgcactatgcgggttccgaattacgagaaa 5971
Query: 647 agtccttactgaggtagttgttgtatttcctattttgaaatatcaaacaactatactgga 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5972 agtccttactgaggtagttgttgtatttcctattttgaaatatcaaacaactatactgga 6031
Query: 707 ttatggacgatncaagctgt-aggtgggtgcaggtaaatagggttgtttgaaccaactac 765
||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 6032 ttatggacgat-caagctgtaaggtgggtgcaggtaaataggg-tgtttgaaccaactac 6089
Query: 766 ttgaattatgcgtgatagaatattgcggnngttagttngactttccgggctcgagtaatt 825
|||||||||||||||||||||||||||| | ||||| ||| ||||||||||||||||||
Sbjct: 6090 ttgaattatgcgtgatagaatattgcgg--ggtagtttgac-ttccgggctcgagtaatt 6146
Query: 826 aggtaggctggtgttaaagcgactgtctatttttttagtttttgtatcacgtgcataaaa 885
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 6147 aggtaggctggtgttaaagcgactgtctatttttttagtttttgtatcacgtgcataaga 6206
Query: 886 tcanatag-tttctctcctggtgtctgctgccggattacagccgtttccgtc-ctatttg 943
||| |||| |||||||||||||||||||||||| | ||||||| ||||||| |||||||
Sbjct: 6207 tcagatagttttctctcctggtgtctgctgccgagtaacagccg-ttccgtcactatttg 6265
Query: 944 gca 946
|||
Sbjct: 6266 gca 6268
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6549
Number of Sequences: 1807
Number of extensions: 6549
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)