BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC44ZD03FM1.SCF screened BAC_end (887 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1268 906 0.0 >3x_Contig1268 Length = 6710 Score = 906 bits (457), Expect = 0.0 Identities = 552/576 (95%), Gaps = 7/576 (1%) Strand = Plus / Minus Query: 85 tggatccgtgtaacctttctgataccctgagaattgatgttttagttctggcaagttatg 144 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5580 tggatccgtgtaacctctctgataccctgagaattgatgttttagttctggcaagttatg 5521 Query: 145 agataatagtggtttcaaatccgtattgaaatcctttggaacggtatatgtacgcaccc- 203 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5520 agataatagtggtttcaaatccgtattgaaatcctttggaacggtatatgtacgcacccc 5461 Query: 204 tgttccagttaattttataaccaccatattgtgtatgtctaccaatacctgaagatctgg 263 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5460 tgttccagttaattttataaccaccatattgtgtatgtctaccaatacctgaagatctgg 5401 Query: 264 tacccttgtacatagacttgttaccatccttcgtcgtcaatggtacacgcttgttaccta 323 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5400 tacccttgtacatagacttgttaccatccttcgtcgtcaatggtacacgcttgttaccta 5341 Query: 324 ctttagaagcaccatagaattacgtaccatcacggtatttcttccaaggtctcgttagtt 383 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 5340 ctttagaagcaccatagaataacgtaccatcacggtatttcttccaaggtctcgttagtt 5281 Query: 384 gtgttatttgagattgttgaaaaaatctagcggaggtaggtttcattgctagtttattag 443 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5280 gtgttatttgagattgttgaaaaaatctagcggaggtaggtttcattgctagtttattag 5221 Query: 444 tctgataatttcaaagttttgacttat-aatgagtttgtagatgatgtcaaggtgccttt 502 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 5220 tctgataatttcaaagttttgacttataaatgagtttgtagatgatgtcaaggtgccttt 5161 Query: 503 cctgtgtgtcgtgtccttcattgaactttgaactcaaac-attttgacg-tttttgattt 560 ||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||| Sbjct: 5160 cctgtgtgtcgtgtccttcattgaactttgaactcaaacaattttgacgctttctgattt 5101 Query: 561 cattgttacagagagaactgaaactta--aaaaaatttttcccttccaaacagaacccgg 618 ||| | |||||||||||||||| || |||||||||| || | | ||||| | |||| Sbjct: 5100 catgttaacagagagaactgaaagctaagaaaaaattttaccatacaaaacaagaaccgg 5041 Query: 619 gtaagtttaatgattattgcggaacttgcaagagcc 654 ||||||||| |||||| ||||| ||||||||||||| Sbjct: 5040 gtaagtttagtgattagtgcgg-acttgcaagagcc 5006 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7890 Number of Sequences: 1807 Number of extensions: 7890 Number of successful extensions: 42 Number of sequences better than 1.0e-20: 1 length of query: 887 length of database: 10,358,551 effective HSP length: 16 effective length of query: 871 effective length of database: 10,329,639 effective search space: 8997115569 effective search space used: 8997115569 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)