BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC44ZD03FM1.SCF screened BAC_end
         (887 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1268                                                         906   0.0  

>3x_Contig1268 
          Length = 6710

 Score =  906 bits (457), Expect = 0.0
 Identities = 552/576 (95%), Gaps = 7/576 (1%)
 Strand = Plus / Minus

                                                                        
Query: 85   tggatccgtgtaacctttctgataccctgagaattgatgttttagttctggcaagttatg 144
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5580 tggatccgtgtaacctctctgataccctgagaattgatgttttagttctggcaagttatg 5521

                                                                        
Query: 145  agataatagtggtttcaaatccgtattgaaatcctttggaacggtatatgtacgcaccc- 203
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 5520 agataatagtggtttcaaatccgtattgaaatcctttggaacggtatatgtacgcacccc 5461

                                                                        
Query: 204  tgttccagttaattttataaccaccatattgtgtatgtctaccaatacctgaagatctgg 263
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5460 tgttccagttaattttataaccaccatattgtgtatgtctaccaatacctgaagatctgg 5401

                                                                        
Query: 264  tacccttgtacatagacttgttaccatccttcgtcgtcaatggtacacgcttgttaccta 323
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5400 tacccttgtacatagacttgttaccatccttcgtcgtcaatggtacacgcttgttaccta 5341

                                                                        
Query: 324  ctttagaagcaccatagaattacgtaccatcacggtatttcttccaaggtctcgttagtt 383
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 5340 ctttagaagcaccatagaataacgtaccatcacggtatttcttccaaggtctcgttagtt 5281

                                                                        
Query: 384  gtgttatttgagattgttgaaaaaatctagcggaggtaggtttcattgctagtttattag 443
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5280 gtgttatttgagattgttgaaaaaatctagcggaggtaggtttcattgctagtttattag 5221

                                                                        
Query: 444  tctgataatttcaaagttttgacttat-aatgagtttgtagatgatgtcaaggtgccttt 502
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 5220 tctgataatttcaaagttttgacttataaatgagtttgtagatgatgtcaaggtgccttt 5161

                                                                        
Query: 503  cctgtgtgtcgtgtccttcattgaactttgaactcaaac-attttgacg-tttttgattt 560
            ||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||
Sbjct: 5160 cctgtgtgtcgtgtccttcattgaactttgaactcaaacaattttgacgctttctgattt 5101

                                                                        
Query: 561  cattgttacagagagaactgaaactta--aaaaaatttttcccttccaaacagaacccgg 618
            |||  | ||||||||||||||||  ||  |||||||||| || | | |||||  | ||||
Sbjct: 5100 catgttaacagagagaactgaaagctaagaaaaaattttaccatacaaaacaagaaccgg 5041

                                                
Query: 619  gtaagtttaatgattattgcggaacttgcaagagcc 654
            ||||||||| |||||| ||||| |||||||||||||
Sbjct: 5040 gtaagtttagtgattagtgcgg-acttgcaagagcc 5006


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7890
Number of Sequences: 1807
Number of extensions: 7890
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 887
length of database: 10,358,551
effective HSP length: 16
effective length of query: 871
effective length of database: 10,329,639
effective search space: 8997115569
effective search space used: 8997115569
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)