BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZD03RM1.SCF screened BAC_end
(912 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1501 1602 0.0
>3x_Contig1501
Length = 10010
Score = 1602 bits (808), Expect = 0.0
Identities = 860/871 (98%), Gaps = 5/871 (0%)
Strand = Plus / Minus
Query: 43 ttcgcatttatctattgatccgtcttctacgaatttttgggtggagggagaaatcaagag 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7916 ttcgcatttatctattgatccgtcttctacgaatttttgggtggagggagaaatcaagag 7857
Query: 103 catgatcaacactaacaatgtagctgaattcaagaaaattctgaaaggcggtttacatgt 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7856 catgatcaacactaacaatgtagctgaattcaagaaaattctgaaaggcggtttacatgt 7797
Query: 163 cttaaatgtaactaaaactcgagatttcgagatatatgcgactttcaataacgtcattcc 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7796 cttaaatgtaactaaaactcgagatttcgagatatatgcgactttcaataacgtcattcc 7737
Query: 223 ctctatgaatggtgtaattcttaacgacattgtgcatcaaaagatcgacgttcttatcga 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7736 ctctatgaatggtgtaattcttaacgacattgtgcatcaaaagatcgacgttcttatcga 7677
Query: 283 gtgtttggacgaattacttgatacgagcatatatgctttaagtcatttacaggagtcatt 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7676 gtgtttggacgaattacttgatacgagcatatatgctttaagtcatttacaggagtcatt 7617
Query: 343 gttgctacaacagaaaaaagatccctttaaatcgaggtgttttatccaagtgattcgatt 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7616 gttgctacaacagaaaaaagatccctttaaatcgaggtgttttatccaagtgattcgatt 7557
Query: 403 tctgaccctactattctctaatttcaagatcattaaattcctagatggtaacctctcgct 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7556 tctgaccctactattctctaatttcaagatcattaaattcctagatggtaacctctcgct 7497
Query: 463 acaactgaagtttatagaggttttgaaggcttgtgaggaatctttgacgcatagtaacac 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7496 acaactgaagtttatagaggttttgaaggcttgtgaggaatctttgacgcatagtaacac 7437
Query: 523 taataaagtgatggtaatatacccactaactctattgaaggaagagaagtttggacagtt 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7436 taataaagtgatggtaatatacccactaactctattgaaggaagagaagtttggacagtt 7377
Query: 583 ctatttaccagattcacaaatacgacaattggtaaattcggtgtttacaatgaagtatat 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7376 ctatttaccagattcacaaatacgacaattggtaaattcggtgtttacaatgaagtatat 7317
Query: 643 tgatagcacgaatgttcaatgtgaaaggctcatggttntaaagcagtttttgcaaaagta 702
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 7316 tgatagcacgaatgttcaatgtgaaaggctcatggttttaaagcagtttttgcaaaagta 7257
Query: 703 tagcaaggtgatgttggaaactcttcgtacttggtttccgtctgaagtggcggcacgata 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7256 tagcaaggtgatgttggaaactcttcgtacttggtttccgtctgaagtggcggcacgata 7197
Query: 763 tctaatggaagacagagttacatccgccaagacaaggtcctgctgtaatttgatcatctt 822
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 7196 tctaatggaagacagagtaacatccgccaagacaaggtcctgctgtaatttgatcatctt 7137
Query: 823 agaattactacggaagtgcattttcaatgacaaagtc-gaacagcaa-tattgaaa-tga 879
||| ||||||||||||||||| | ||||||||||||| ||||||||| |||||||| |||
Sbjct: 7136 agatttactacggaagtgcatctccaatgacaaagtcagaacagcaattattgaaattga 7077
Query: 880 at-actatcactttaga-cgttgtggaaaat 908
|| |||||||||| ||| |||||||||||||
Sbjct: 7076 atcactatcacttaagagcgttgtggaaaat 7046
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6468
Number of Sequences: 1807
Number of extensions: 6468
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)