BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZD04FM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig429 1039 0.0
>3x_Contig429
Length = 1524
Score = 1039 bits (524), Expect = 0.0
Identities = 588/601 (97%), Gaps = 8/601 (1%)
Strand = Plus / Minus
Query: 89 attgccgagtttgggaagaagggtaaaccaactccttcccaatctactacttccttggca 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 attgccgagtttgggaagaagggtaaaccaactccttcccaatctactacttccttggca 538
Query: 149 aaattagcgtcggaaggaattgaatcttattcagactcaaagatctctgaaattaccgta 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 aaattagcgtcggaaggaattgaatcttattcagactcaaagatctctgaaattaccgta 478
Query: 209 gatataaatcagttggacaccgaaaacttatctgaagctgaagacctaaaatctctaaga 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gatataaatcagttggacaccgaaaacttatctgaagctgaagacctaaaatctctaaga 418
Query: 269 agagcttctttggcaaccttaggctcaattggttttgatgacaatgaaaatagcgccaga 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 agagcttctttggcaaccttaggctcaattggttttgatgacaatgaaaatagcgccaga 358
Query: 329 agagaacacagggaacaaggtaaagtcaaatgggatatttatatggagtacgcccgtgcg 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 agagaacacagggaacaaggtaaagtcaaatgggatatttatatggagtacgcccgtgcg 298
Query: 389 tgtaacccccgcaacgtgtgtgtgtttttgggtttcctaatcctctcgatgctgttggcc 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tgtaacccccgcaacgtgtgtgtgtttttgggtttcctaatcctctcgatgctgttggcc 238
Query: 449 gtcattggtaatttctggctcaaacactggtcagaagtcaatactgagaaaggctataac 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 gtcattggtaatttctggctcaaacactggtcagaagtcaatactgagaaaggctataac 178
Query: 509 ccccatgccacaagatatttgatgatttacttagctttnaggtg-tggttccgctctggc 567
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 177 ccccatgccacaagatatttgatgatttacttagcttt-aggtgttggttccgctctggc 119
Query: 568 aac-ttaatacagactattgntctatgggtattctgtactatccatgggctc--agtatt 624
||| |||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||
Sbjct: 118 aacattaatacagactattgttctatgggtattctgtactatccat-ggctccaagtatt 60
Query: 625 tacatgatgcantggctttcaagggttttaaaagcacctttgtctttcctttgaaacaac 684
||||||||||| |||| |||||| |||||||| |||||| ||||||| ||||||||||||
Sbjct: 59 tacatgatgcaatggc-ttcaagtgttttaaaggcacctatgtcttt-ctttgaaacaac 2
Query: 685 t 685
|
Sbjct: 1 t 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6507
Number of Sequences: 1807
Number of extensions: 6507
Number of successful extensions: 31
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)