BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZD05FM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1354 1015 0.0
>3x_Contig1354
Length = 7778
Score = 1015 bits (512), Expect = 0.0
Identities = 548/559 (98%), Gaps = 1/559 (0%)
Strand = Plus / Minus
Query: 86 aaaaccctgtgcatggaacggtggcaaaaacccgcaaaaagctttgagaagaactcccca 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6691 aaaaccctgtgcatggaacggtggcaaaaacccgcaaaaagctttgagaagaactcccca 6632
Query: 146 tgcccagaacttctaagcacagatttttgctgagaaaaaaagaaccaactcttcaacgca 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6631 tgcccagaacttctaagcacagatttttgctgagaaaaaaagaaccaactcttcaacgca 6572
Query: 206 gcacagaaattaaagaagagcgcttgaagtgaggggcaccgagttcatctcggtggtgcc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6571 gcacagaaattaaagaagagcgcttgaagtgaggggcaccgagttcatctcggtggtgcc 6512
Query: 266 ttagatcatcaacagttcctcaagagtacgaaatgtcttgctggatcggccgattgtgaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6511 ttagatcatcaacagttcctcaagagtacgaaatgtcttgctggatcggccgattgtgaa 6452
Query: 326 ttatggctggtttcactctgtttccagtttggagtggcagatgcaagaccagatttaaat 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6451 ttatggctggtttcactctgtttccagtttggagtggcagatgcaagaccagatttaaat 6392
Query: 386 atccaatatatgcatgagtgatgttgaaaagggacacgggagttaaggtgatcgaaaggc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6391 atccaatatatgcatgagtgatgttgaaaagggacacgggagttaaggtgatcgaaaggc 6332
Query: 446 gttttactctcaggtgtggtacgagagattgcgtattgccgtgcgccagttttttcgtat 505
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 6331 gttttactctcaggtgtggtacgagagattgcgtattgccgtgcgccagtttttcggtat 6272
Query: 506 gtaaattgtgttttctattctagcctttcgttttattttcctattctggcttttctggtc 565
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 6271 gtaaattgtgttttctattctagcctttcgttttattttcctaatctggctcttctggtc 6212
Query: 566 tcagcccgatgtctctttccttttccccttncgacccacccacccactcattaatctttg 625
||||||||||||||| |||||||| ||||| |||||||||||||||||||| ||||| ||
Sbjct: 6211 tcagcccgatgtctc-ttcctttttcccttccgacccacccacccactcatcaatctctg 6153
Query: 626 gtacagttgctataaattg 644
||||||||||||| ||||
Sbjct: 6152 ttacagttgctatatattg 6134
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8990
Number of Sequences: 1807
Number of extensions: 8990
Number of successful extensions: 695
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)