BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC44ZD05RM1.SCF screened BAC_end
         (942 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1075                                                        1332   0.0  

>3x_Contig1075 
          Length = 3835

 Score = 1332 bits (672), Expect = 0.0
 Identities = 809/842 (96%), Gaps = 11/842 (1%)
 Strand = Plus / Plus

                                                                        
Query: 48   tacaagaaggcaacctcgatcaaccaaaagccttgaaatgagggaaactttatgcccagt 107
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2013 tacaagaaggcaacctcgatcaaccaaaagccttgaaatgagggaaactttatgcccagt 2072

                                                                        
Query: 108  caccaggaaaaaggcaactgcctcgtcaggaaagtgttatagtacttaaaattgtgtcag 167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2073 caccaggaaaaaggcaactgcctcgtcaggaaagtgttatagtacttaaaattgtgtcag 2132

                                                                        
Query: 168  aatttttatgcagaaagaatgatctagtaatatcataaaaagttgtctgtttattttata 227
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2133 aatttttatgcagaaagaatgatctagtaatatcataaaaagttgtctgtttattttata 2192

                                                                        
Query: 228  tgttgaggatgaatgcacaggaagaagagtcaccaatggatacgcaacaactggcgtaca 287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2193 tgttgaggatgaatgcacaggaagaagagtcaccaatggatacgcaacaactggcgtaca 2252

                                                                        
Query: 288  tcgcagcccttaagagagaactcacagctaaggagcaattattgagacagacgatacagg 347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2253 tcgcagcccttaagagagaactcacagctaaggagcaattattgagacagacgatacagg 2312

                                                                        
Query: 348  catgtaacagagctgaagccaatttaaatacagacgtggtgaattacagagtttgggatc 407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2313 catgtaacagagctgaagccaatttaaatacagacgtggtgaattacagagtttgggatc 2372

                                                                        
Query: 408  aattggcacagaggcagatgtacacttcgagtagatctgatccgattgggattgcgtcat 467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2373 aattggcacagaggcagatgtacacttcgagtagatctgatccgattgggattgcgtcat 2432

                                                                        
Query: 468  tgaagcagagtttgcaagttgacaacaaacaatcaatattcaatgaaacagagcaatttc 527
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2433 tgaagcagagtttgcaagttgacaacaaacaatcaatattcaatgaaacagagcaatttc 2492

                                                                        
Query: 528  tagttgagatggtaaataaacagaaacagtttaatgcagatatgtcgtcattgattgtga 587
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2493 tagttgagatggtaaataaacagaaacagtttaatgcagatatgtcgtcattgattgtga 2552

                                                                        
Query: 588  tgttacaagaacgtcttcgtgatgagaatcaatcaccctgaaatgccngnagatccaatt 647
            |||||||||||||||||||||||||||||||||||||   ||||||| | ||||||||||
Sbjct: 2553 tgttacaagaacgtcttcgtgatgagaatcaatcacctgaaaatgccgg-agatccaatt 2611

                                                                        
Query: 648  ggaatgatttcagaaatgaagtctaaatttttcgatctaatttcgaatcatatggccgta 707
            |||||||||  |||||||||||||||| ||||||||||||||   |||||||||||||||
Sbjct: 2612 ggaatgattcaagaaatgaagtctaaaattttcgatctaattcgaaatcatatggccgta 2671

                                                                        
Query: 708  gacatttccacacca-tatactctgcagatatcgctgctgcagacattgacaa--cttat 764
            ||||||||||||||| ||||||||||||||||||||||||||||||| |||||  || ||
Sbjct: 2672 gacatttccacaccaatatactctgcagatatcgctgctgcagacat-gacaaacctaat 2730

                                                                        
Query: 765  gaaaaaggttattaatggtgattcaaactta-cagtccatgactttca-ccagatgg-at 821
            || || | | |||||||||||||||| | || ||||||||||||| || |||||| | ||
Sbjct: 2731 gagaaggttaattaatggtgattcaaccctaacagtccatgacttccaaccagattgtat 2790

                                                                        
Query: 822  gaatttgttttcggat-ctggatacagcgtatttattaccaaaaat-gatatgaatggga 879
            |||||||||| ||||| ||||||||||||||| |||||| ||| || |||||||||||||
Sbjct: 2791 gaatttgttt-cggatactggatacagcgtatctattacaaaagatagatatgaatggga 2849

              
Query: 880  ct 881
            ||
Sbjct: 2850 ct 2851


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6801
Number of Sequences: 1807
Number of extensions: 6801
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)