BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZD06FM1.SCF screened BAC_end
(877 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig551 900 0.0
>3x_Contig551
Length = 2723
Score = 900 bits (454), Expect = 0.0
Identities = 533/549 (97%), Gaps = 8/549 (1%)
Strand = Plus / Minus
Query: 88 taagatcgatccaagatccgaacaagccaagatcggtcttgctcaactaaaattgcaaca 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2431 taagatcgatccaagatccgaacaagccaagatcggtcttgctcaactaaaattgcaaca 2372
Query: 148 agaagaaattgatgatgccattcaattgttcgaagatgctgccgatctctcaagatcttt 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2371 agaagaaattgatgatgccattcaattgttcgaagatgctgccgatctctcaagatcttt 2312
Query: 208 cgatgaaaaactacaagctactactttcgctgaggctaccaaggtccagaaaaagatcag 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2311 cgatgaaaaactacaagctactactttcgctgaggctaccaaggtccagaaaaagatcag 2252
Query: 268 agctgatccattcattatgggtaagatcgacgaagctattgcagcctaccgtgctcaagg 327
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2251 agctgatccattcattaagggtaagatcgacgaagctattgcagcctaccgtgctcaagg 2192
Query: 328 tctcgcgtaaattagcatgatattcacgaatgaatttaattcatttcaatatgagtaaag 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2191 tctcgcgtaaattagcatgatattcacgaatgaatttaattcatttcaatatgagtaaag 2132
Query: 388 ctacaatagctcattgtttttgtctcaccttaatgaccataatggcaacataccattgca 447
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 2131 ctacaatagctcattgtttttgtctcaccttaatgaccataatggcaacataccatgcaa 2072
Query: 448 catctanacgaatgaattaccaagaaagttatgattttacaaacaaaaagttgtagcatt 507
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2071 catctaaacgaatgaattaccaagaaagttatgattttacaaacaaaaagttgtagcatt 2012
Query: 508 tcaccc-agttatttatgactcgtaagcagcgtgaactgtgttaat-cgtaaacgacagg 565
|||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 2011 tcacccaagttatttatgactcgtaagcagcgtgaactgtgttaatgcgtaaacgacaag 1952
Query: 566 aatctc-acattac-acgtgaag-attagaaatagttatcaattctt-ac-aaaaccaga 620
||||| ||||||| |||||||| || |||||||||||||||||||| || ||||| |||
Sbjct: 1951 -atctcaacattacaacgtgaagaataagaaatagttatcaattcttcacaaaaacaaga 1893
Query: 621 caaaaagaa 629
|||||||||
Sbjct: 1892 caaaaagaa 1884
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,231
Number of Sequences: 1807
Number of extensions: 14231
Number of successful extensions: 241
Number of sequences better than 1.0e-20: 1
length of query: 877
length of database: 10,358,551
effective HSP length: 16
effective length of query: 861
effective length of database: 10,329,639
effective search space: 8893819179
effective search space used: 8893819179
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)