BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZD07FM1.SCF screened BAC_end
(895 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1542 1061 0.0
>3x_Contig1542
Length = 13810
Score = 1061 bits (535), Expect = 0.0
Identities = 601/615 (97%), Gaps = 6/615 (0%)
Strand = Plus / Plus
Query: 87 cagcactcaaatggttttgtgatctcaatagcttggacttgtaaggctctctctggtaat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12852 cagcactcaaatggttttgtgatctcaatagcttggacttgtaaggctctctctggtaat 12911
Query: 147 cttctgggtagtatctgaattctgggccatcgtaacacagtccagatggcttataaaatg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12912 cttctgggtagtatctgaattctgggccatcgtaacacagtccagatggcttataaaatg 12971
Query: 207 gtatgtgagtgagcaataccgtactaccttcgaatttcctttcaaataattggtataaaa 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12972 gtatgtgagtgagcaataccgtactaccttcgaatttcctttcaaataattggtataaaa 13031
Query: 267 attcccaattggtttcaagtaattctggttgtagtgcaggtccttctaataataaatcgt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13032 attcccaattggtttcaagtaattctggttgtagtgcaggtccttctaataataaatcgt 13091
Query: 327 tcaaaacaattatcctccatgcattatcggtgccagcattatattcaatccaataattat 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13092 tcaaaacaattatcctccatgcattatcggtgccagcattatattcaatccaataattat 13151
Query: 387 cttttcccaagagttcgcgatatcttgccatgtgttgataagtggcatctccagagtagc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13152 cttttcccaagagttcgcgatatcttgccatgtgttgataagtggcatctccagagtagc 13211
Query: 447 caatatcgtggtttccagaaacattgatgaacaaatagttttcggctgaagtccaattgt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13212 caatatcgtggtttccagaaacattgatgaacaaatagttttcggctgaagtccaattgt 13271
Query: 507 agatatcttgataaccgaaactaaaattcatgggacgatcgccggttctgattttgtt-a 565
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 13272 agatatcttgataaccgaaactaaaattcatgggacgatcgccggttctgattttgttca 13331
Query: 566 gattatcagcccattcgaccc-atttaccttgtaagt-ccatcgtctccgtgatgttctt 623
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 13332 gattatcagcccattcgacccaatttaccttgtaagtaccatcgtctccgtgatgttctt 13391
Query: 624 cttgttagtcattc-accacttttcatttctattaaa-agtctttttgggtcccgaac-g 680
||||| ||||| | |||||||| ||| ||||||||| |||||||||| || |||||| |
Sbjct: 13392 cttgtaggtcatacaaccactttacatctctattaaatagtctttttgtgtaccgaacgg 13451
Query: 681 tccgattgaaaaact 695
|||||||||| ||||
Sbjct: 13452 tccgattgaagaact 13466
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6360
Number of Sequences: 1807
Number of extensions: 6360
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 895
length of database: 10,358,551
effective HSP length: 16
effective length of query: 879
effective length of database: 10,329,639
effective search space: 9079752681
effective search space used: 9079752681
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)