BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZD09FM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1312 1053 0.0
>3x_Contig1312
Length = 5472
Score = 1053 bits (531), Expect = 0.0
Identities = 635/663 (95%), Gaps = 5/663 (0%)
Strand = Plus / Plus
Query: 86 cgaaccaaaagaagcctcgaaccaaaagagttttgcctgaaaaccaagcggtttcacttt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3929 cgaaccaaaagaagcctcgaaccaaaagagttttgcctgaaaaccaagcggtttcacttt 3988
Query: 146 ctacagatcgaccttccttgcacgctttcaccgcaagcaacagtacctacacgacgtact 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3989 ctacagatcgaccttccttgcacgctttcaccgcaagcaacagtacctacacgacgtact 4048
Query: 206 tccgatttattcgagcagagatattgatagcctttgttttttgtcgttaagatttgaaaa 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4049 tccgatttattcgagcagagatattgatagcctttgttttttgtcgttaagatttgaaaa 4108
Query: 266 caaaaaaaaaggattttcccaattactttcccacagaaaaagtcgtgcaataaagattcg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4109 caaaaaaaaaggattttcccaattactttcccacagaaaaagtcgtgcaataaagattcg 4168
Query: 326 tacacttgttcccctaaaagcgtcgtatacgattttcccttgacaccaatatagttagta 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4169 tacacttgttcccctaaaagcgtcgtatacgattttcccttgacaccaatatagttagta 4228
Query: 386 caagagaagaaataattactctcagtgctgaacaaactcggagataggactatcgcacaa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4229 caagagaagaaataattactctcagtgctgaacaaactcggagataggactatcgcacaa 4288
Query: 446 tcaaagtaatacaggttgngtgtcgtcttcctcatatattcatttggttgaagtacttga 505
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 4289 tcaaagtaatacaggttg-gtgtcgtcttcctcatatattcatttggttgaagtacttga 4347
Query: 506 gcttacattggtttttttgttgttcactttcaggctgacatcttggcatgctttttgttt 565
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 4348 gcttacattggtttttttgttgttcactttcaggctgacatcttggcatgctttctgttc 4407
Query: 566 cctaacctccaactg-acctaatactggaggaccacctttga-aagaggccacagaatta 623
| |||||||||||| |||||||||||||||| |||| |||| ||||||||||||| ||
Sbjct: 4408 ctaaacctccaactgaacctaatactggaggaacacccttgagaagaggccacagacata 4467
Query: 624 aaaaatcgtttgcaatttcgggtgactttgaattc-taaaaaagaacctttttggagac- 681
||| ||||||||||||||||||||||||||||||| |||||||| ||| | || |||||
Sbjct: 4468 aaagatcgtttgcaatttcgggtgactttgaattcttaaaaaaggaccctcttcgagacg 4527
Query: 682 cgactttttcaattggttcaaaagccatttttgcgggggattttaaaaacccaacttcag 741
|||||||| ||||||||||| |||||| || ||||| ||||| || | || ||||| |||
Sbjct: 4528 cgacttttccaattggttcagaagccaattatgcggtggattctagagacgcaactccag 4587
Query: 742 tgt 744
|||
Sbjct: 4588 tgt 4590
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9123
Number of Sequences: 1807
Number of extensions: 9123
Number of successful extensions: 84
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)