BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZD09RM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1639 1237 0.0
>3x_Contig1639
Length = 14140
Score = 1237 bits (624), Expect = 0.0
Identities = 757/794 (95%), Gaps = 6/794 (0%)
Strand = Plus / Plus
Query: 46 gcttctaaaaccactcattagaaacgaaatatgagaacactccgagtatacgggaaaacc 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8846 gcttctaaaaccactcattagaaacgaaatatgagaacactccgagtatacgggaaaacc 8905
Query: 106 aacaatgcatcagctgttttttgacccattcgtaaccatttttgtttctctaattgcttt 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8906 aacaatgcatcagctgttttttgacccattcgtaaccatttttgtttctctaattgcttt 8965
Query: 166 caatacaaccattgatatgccaagaagccctcaaaacttagatattctcttattcccgac 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8966 caatacaaccattgatatgccaagaagccctcaaaacttagatattctcttattcccgac 9025
Query: 226 cgaattgttattttgagactacatgaatgaggctaatatcttatgctcatagtaaactta 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9026 cgaattgttattttgagactacatgaatgaggctaatatcttatgctcatagtaaactta 9085
Query: 286 accaactacccttaagttggccttaccttgtagttgagaaggagcatctggagaaataac 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9086 accaactacccttaagttggccttaccttgtagttgagaaggagcatctggagaaataac 9145
Query: 346 atgaaaaaaaaacccttcttaacgggaaaatctggttggaatcatgagatctatgtagta 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9146 atgaaaaaaaaacccttcttaacgggaaaatctggttggaatcatgagatctatgtagta 9205
Query: 406 tagaatcagctgttttcgccagtccctgcctagcccatgagatatcgtaagaaattgatg 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9206 tagaatcagctgttttcgccagtccctgcctagcccatgagatatcgtaagaaattgatg 9265
Query: 466 cgtaccaagatggtaacgggtccgcactggaaaagtctcagtggagttaaagctgctgag 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9266 cgtaccaagatggtaacgggtccgcactggaaaagtctcagtggagttaaagctgctgag 9325
Query: 526 tgataacagcacaacgcttccggatctaacctgntaattctatatcatgccaaagttttt 585
|||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 9326 tgataacagcacaacgctcccggatctaacctgtaaattctatatcatgccaaagttttt 9385
Query: 586 tcgaaaagattgggtgtacggattatcagttaaagggaaacgcac-aaattattntcacg 644
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 9386 tcgaaaagattgggtgtacggattatcagttaaagggaaacgcacaaaattattttcacg 9445
Query: 645 tttttgaggtacaatctgaaaagaccgttatgcatgtcaagggttaatttcaacgtacgg 704
||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||
Sbjct: 9446 -ttttgaggtacaatctgaaaagaccgttatgcatgtc-aggggtaaattcaacgtacgg 9503
Query: 705 gaatttgtccgt-aagaaaaa-gcccccgatgccccaagggtacctttttgcttccggaa 762
||| | | || |||||||| || || ||||| | || |||||| ||||||||| |||
Sbjct: 9504 gaaatatgcagtaaagaaaaaggcaccagatgcacgaa-ggtaccattttgcttcgtgaa 9562
Query: 763 ataacgcaaacagtcgtacccttttgaaaaatggttctaaaggtattttgaggactattg 822
||||||||||||||||||| ||| || | || |||| |||||||||||||| ||| |
Sbjct: 9563 ataacgcaaacagtcgtacgcttctgcagaactgttcgtaaggtattttgaggcatatgg 9622
Query: 823 tttgggttggtaac 836
|||||||| ||||
Sbjct: 9623 cttgggttgataac 9636
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6644
Number of Sequences: 1807
Number of extensions: 6644
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)